Hb_000057_180

Information

Type -
Description -
Location Contig57: 241413-242200
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18200g
description POPTRDRAFT_548837; hypothetical protein
nr
ID XP_002299700.1
description hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GFP1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s18200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49306: 241430-241976 , PASA_asmbl_49307: 241426-242142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_180 0.0 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
2 Hb_011861_020 0.0701587696 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
3 Hb_150730_010 0.0719505759 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
4 Hb_116469_010 0.0814798429 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
5 Hb_028927_010 0.0833605594 - - leucine-rich repeat protein, putative [Ricinus communis]
6 Hb_000471_010 0.0960343174 - - ATP binding protein, putative [Ricinus communis]
7 Hb_002003_030 0.0966061923 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
8 Hb_005730_070 0.0989506384 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
9 Hb_000556_180 0.1006631474 - - hypothetical protein POPTR_0014s06690g [Populus trichocarpa]
10 Hb_000684_490 0.1102120784 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
11 Hb_000834_210 0.1108600976 - - unnamed protein product [Vitis vinifera]
12 Hb_006573_260 0.1162938945 - - -
13 Hb_004586_110 0.1206616905 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_000723_240 0.1211548691 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
15 Hb_000005_350 0.1221748116 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
16 Hb_000589_100 0.1262351625 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_009778_050 0.1277472844 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
18 Hb_007313_010 0.1350348464 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
19 Hb_003160_050 0.1358339075 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
20 Hb_008554_090 0.1376663086 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000057_180 Hb_000057_180 Hb_011861_020 Hb_011861_020 Hb_000057_180--Hb_011861_020 Hb_150730_010 Hb_150730_010 Hb_000057_180--Hb_150730_010 Hb_116469_010 Hb_116469_010 Hb_000057_180--Hb_116469_010 Hb_028927_010 Hb_028927_010 Hb_000057_180--Hb_028927_010 Hb_000471_010 Hb_000471_010 Hb_000057_180--Hb_000471_010 Hb_002003_030 Hb_002003_030 Hb_000057_180--Hb_002003_030 Hb_011861_020--Hb_000471_010 Hb_011861_020--Hb_150730_010 Hb_000005_350 Hb_000005_350 Hb_011861_020--Hb_000005_350 Hb_011861_020--Hb_116469_010 Hb_000684_490 Hb_000684_490 Hb_011861_020--Hb_000684_490 Hb_150730_010--Hb_002003_030 Hb_009778_050 Hb_009778_050 Hb_150730_010--Hb_009778_050 Hb_150730_010--Hb_116469_010 Hb_150730_010--Hb_000471_010 Hb_116469_010--Hb_002003_030 Hb_116469_010--Hb_028927_010 Hb_116469_010--Hb_000005_350 Hb_028927_010--Hb_011861_020 Hb_000589_100 Hb_000589_100 Hb_028927_010--Hb_000589_100 Hb_000723_240 Hb_000723_240 Hb_028927_010--Hb_000723_240 Hb_006573_260 Hb_006573_260 Hb_028927_010--Hb_006573_260 Hb_000471_010--Hb_000684_490 Hb_004586_110 Hb_004586_110 Hb_000471_010--Hb_004586_110 Hb_000471_010--Hb_116469_010 Hb_000471_010--Hb_000005_350 Hb_002003_030--Hb_009778_050 Hb_002003_030--Hb_011861_020 Hb_002003_030--Hb_000471_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.96265 11.5767 7.10059 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.162746 0 26.156 2.82682

CAGE analysis