Hb_000058_040

Information

Type -
Description -
Location Contig58: 61074-67936
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15850g
description POPTRDRAFT_246835; hypothetical protein
nr
ID XP_012080712.1
description PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]
swissprot
ID F4IF99
description Probable lipid-A-disaccharide synthase, mitochondrial OS=Arabidopsis thaliana GN=LPXB PE=2 SV=1
trembl
ID A0A067K3N6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13774 PE=4 SV=1
Gene Ontology
ID GO:0008915
description probable lipid-a-disaccharide mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49803: 62429-63871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000058_040 0.0 - - PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]
2 Hb_000529_080 0.071378942 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
3 Hb_004450_060 0.0887547111 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
4 Hb_000088_200 0.092471595 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_003467_010 0.0925236253 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
6 Hb_001663_110 0.0935399885 - - RNA binding protein, putative [Ricinus communis]
7 Hb_005237_060 0.0962110082 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
8 Hb_004525_100 0.0981591758 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
9 Hb_000236_280 0.1001404904 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
10 Hb_000205_120 0.1025610836 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
11 Hb_007643_050 0.1029502531 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000976_270 0.1043760337 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
13 Hb_178968_100 0.1049744475 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
14 Hb_004044_020 0.1053414248 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
15 Hb_171900_100 0.1067877074 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
16 Hb_012305_070 0.1071490024 - - conserved hypothetical protein [Ricinus communis]
17 Hb_164010_020 0.1075966497 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
18 Hb_004241_070 0.1083064287 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
19 Hb_003126_040 0.1084978273 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002687_140 0.1087058343 - - hypothetical protein JCGZ_24463 [Jatropha curcas]

Gene co-expression network

sample Hb_000058_040 Hb_000058_040 Hb_000529_080 Hb_000529_080 Hb_000058_040--Hb_000529_080 Hb_004450_060 Hb_004450_060 Hb_000058_040--Hb_004450_060 Hb_000088_200 Hb_000088_200 Hb_000058_040--Hb_000088_200 Hb_003467_010 Hb_003467_010 Hb_000058_040--Hb_003467_010 Hb_001663_110 Hb_001663_110 Hb_000058_040--Hb_001663_110 Hb_005237_060 Hb_005237_060 Hb_000058_040--Hb_005237_060 Hb_000205_120 Hb_000205_120 Hb_000529_080--Hb_000205_120 Hb_000265_150 Hb_000265_150 Hb_000529_080--Hb_000265_150 Hb_008887_050 Hb_008887_050 Hb_000529_080--Hb_008887_050 Hb_000976_270 Hb_000976_270 Hb_000529_080--Hb_000976_270 Hb_031939_010 Hb_031939_010 Hb_000529_080--Hb_031939_010 Hb_004450_060--Hb_003467_010 Hb_011848_010 Hb_011848_010 Hb_004450_060--Hb_011848_010 Hb_178968_100 Hb_178968_100 Hb_004450_060--Hb_178968_100 Hb_003091_010 Hb_003091_010 Hb_004450_060--Hb_003091_010 Hb_003849_060 Hb_003849_060 Hb_004450_060--Hb_003849_060 Hb_000359_330 Hb_000359_330 Hb_004450_060--Hb_000359_330 Hb_004044_020 Hb_004044_020 Hb_000088_200--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000088_200--Hb_004525_100 Hb_000236_280 Hb_000236_280 Hb_000088_200--Hb_000236_280 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_000088_200--Hb_178968_100 Hb_000175_390 Hb_000175_390 Hb_000088_200--Hb_000175_390 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_011942_080 Hb_011942_080 Hb_003467_010--Hb_011942_080 Hb_003467_010--Hb_003849_060 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_000394_190 Hb_000394_190 Hb_003467_010--Hb_000394_190 Hb_001663_110--Hb_000976_270 Hb_004447_030 Hb_004447_030 Hb_001663_110--Hb_004447_030 Hb_001663_110--Hb_000205_120 Hb_001663_110--Hb_000236_280 Hb_012305_070 Hb_012305_070 Hb_001663_110--Hb_012305_070 Hb_001663_110--Hb_005237_060 Hb_000684_420 Hb_000684_420 Hb_005237_060--Hb_000684_420 Hb_073171_080 Hb_073171_080 Hb_005237_060--Hb_073171_080 Hb_005701_040 Hb_005701_040 Hb_005237_060--Hb_005701_040 Hb_005237_060--Hb_012305_070 Hb_005237_060--Hb_000088_200 Hb_005237_060--Hb_000236_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3601 7.70819 9.64141 2.27621 21.6744 21.8704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5162 12.2976 4.02408 4.4017 5.18969

CAGE analysis