Hb_000058_050

Information

Type -
Description -
Location Contig58: 84925-89686
Sequence    

Annotation

kegg
ID vvi:100248207
description uncharacterized LOC100248207
nr
ID XP_012080669.1
description PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
swissprot
ID O94580
description Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1442.07c PE=3 SV=1
trembl
ID A0A067K749
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13776 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49804: 83624-89566 , PASA_asmbl_49805: 85624-85992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000058_050 0.0 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
2 Hb_002609_190 0.1376813754 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
3 Hb_010368_080 0.1376856666 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
4 Hb_012305_140 0.138383241 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
5 Hb_000076_100 0.1448948681 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
6 Hb_005568_090 0.1449275788 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_001196_080 0.1488564739 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
8 Hb_002291_060 0.1501548533 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
9 Hb_000692_120 0.1512920971 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
10 Hb_000062_360 0.1555348266 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
11 Hb_000803_180 0.1565343893 - - hexokinase [Manihot esculenta]
12 Hb_011609_010 0.1582038172 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
13 Hb_002259_110 0.1591766951 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
14 Hb_004267_060 0.1600311219 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_000890_010 0.1604662093 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001776_200 0.1614484522 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
17 Hb_006132_040 0.16282341 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
18 Hb_004837_220 0.1641842905 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
19 Hb_002553_010 0.1643925642 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
20 Hb_152910_010 0.1649270204 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]

Gene co-expression network

sample Hb_000058_050 Hb_000058_050 Hb_002609_190 Hb_002609_190 Hb_000058_050--Hb_002609_190 Hb_010368_080 Hb_010368_080 Hb_000058_050--Hb_010368_080 Hb_012305_140 Hb_012305_140 Hb_000058_050--Hb_012305_140 Hb_000076_100 Hb_000076_100 Hb_000058_050--Hb_000076_100 Hb_005568_090 Hb_005568_090 Hb_000058_050--Hb_005568_090 Hb_001196_080 Hb_001196_080 Hb_000058_050--Hb_001196_080 Hb_001133_090 Hb_001133_090 Hb_002609_190--Hb_001133_090 Hb_002609_190--Hb_012305_140 Hb_004800_130 Hb_004800_130 Hb_002609_190--Hb_004800_130 Hb_007031_040 Hb_007031_040 Hb_002609_190--Hb_007031_040 Hb_002259_110 Hb_002259_110 Hb_002609_190--Hb_002259_110 Hb_001205_180 Hb_001205_180 Hb_002609_190--Hb_001205_180 Hb_010368_080--Hb_012305_140 Hb_001369_030 Hb_001369_030 Hb_010368_080--Hb_001369_030 Hb_004267_060 Hb_004267_060 Hb_010368_080--Hb_004267_060 Hb_004526_010 Hb_004526_010 Hb_010368_080--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_010368_080--Hb_000796_120 Hb_004837_220 Hb_004837_220 Hb_010368_080--Hb_004837_220 Hb_005694_130 Hb_005694_130 Hb_012305_140--Hb_005694_130 Hb_003992_180 Hb_003992_180 Hb_012305_140--Hb_003992_180 Hb_000454_140 Hb_000454_140 Hb_012305_140--Hb_000454_140 Hb_007849_050 Hb_007849_050 Hb_012305_140--Hb_007849_050 Hb_015026_020 Hb_015026_020 Hb_000076_100--Hb_015026_020 Hb_124951_010 Hb_124951_010 Hb_000076_100--Hb_124951_010 Hb_000076_100--Hb_010368_080 Hb_000109_130 Hb_000109_130 Hb_000076_100--Hb_000109_130 Hb_000684_100 Hb_000684_100 Hb_000076_100--Hb_000684_100 Hb_000317_190 Hb_000317_190 Hb_000076_100--Hb_000317_190 Hb_000165_110 Hb_000165_110 Hb_005568_090--Hb_000165_110 Hb_000890_010 Hb_000890_010 Hb_005568_090--Hb_000890_010 Hb_011609_010 Hb_011609_010 Hb_005568_090--Hb_011609_010 Hb_000189_390 Hb_000189_390 Hb_005568_090--Hb_000189_390 Hb_005568_090--Hb_002609_190 Hb_000692_120 Hb_000692_120 Hb_001196_080--Hb_000692_120 Hb_000671_060 Hb_000671_060 Hb_001196_080--Hb_000671_060 Hb_069841_010 Hb_069841_010 Hb_001196_080--Hb_069841_010 Hb_003090_150 Hb_003090_150 Hb_001196_080--Hb_003090_150 Hb_005054_310 Hb_005054_310 Hb_001196_080--Hb_005054_310 Hb_002311_140 Hb_002311_140 Hb_001196_080--Hb_002311_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2712 87.9849 127.921 30.8065 56.1418 19.2456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.68472 7.67506 9.71058 40.0562 24.605

CAGE analysis