Hb_000058_060

Information

Type -
Description -
Location Contig58: 98646-102610
Sequence    

Annotation

kegg
ID rcu:RCOM_0511150
description Dual specificity protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012080670.1
description PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
swissprot
ID Q84JU4
description Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1
trembl
ID A0A067KG69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13777 PE=4 SV=1
Gene Ontology
ID GO:0004725
description protein-tyrosine-phosphatase ibr5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000058_060 0.0 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
2 Hb_000009_460 0.0626037957 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007416_320 0.0654712149 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005289_030 0.0670985813 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
5 Hb_159809_020 0.0677919835 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_002759_060 0.0681392395 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
7 Hb_027073_040 0.0718243649 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
8 Hb_000120_470 0.0736836978 - - hypothetical protein VITISV_017372 [Vitis vinifera]
9 Hb_003996_020 0.0754231557 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000384_100 0.0755903039 - - hydrolase, putative [Ricinus communis]
11 Hb_004218_110 0.0756133371 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
12 Hb_001519_050 0.0764209304 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
13 Hb_004635_100 0.0772157271 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
14 Hb_002061_040 0.0780759141 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
15 Hb_033834_040 0.0780804575 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009051_030 0.0803027347 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
17 Hb_005305_080 0.0806068736 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
18 Hb_005568_120 0.080875886 - - Prephenate dehydratase [Hevea brasiliensis]
19 Hb_004254_120 0.081543263 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010504_020 0.081562498 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_000058_060 Hb_000058_060 Hb_000009_460 Hb_000009_460 Hb_000058_060--Hb_000009_460 Hb_007416_320 Hb_007416_320 Hb_000058_060--Hb_007416_320 Hb_005289_030 Hb_005289_030 Hb_000058_060--Hb_005289_030 Hb_159809_020 Hb_159809_020 Hb_000058_060--Hb_159809_020 Hb_002759_060 Hb_002759_060 Hb_000058_060--Hb_002759_060 Hb_027073_040 Hb_027073_040 Hb_000058_060--Hb_027073_040 Hb_000009_460--Hb_159809_020 Hb_000574_480 Hb_000574_480 Hb_000009_460--Hb_000574_480 Hb_000009_460--Hb_007416_320 Hb_003787_010 Hb_003787_010 Hb_000009_460--Hb_003787_010 Hb_000307_090 Hb_000307_090 Hb_000009_460--Hb_000307_090 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_001633_210 Hb_001633_210 Hb_007416_320--Hb_001633_210 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_000876_070 Hb_000876_070 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470 Hb_006117_070 Hb_006117_070 Hb_005289_030--Hb_006117_070 Hb_000230_510 Hb_000230_510 Hb_005289_030--Hb_000230_510 Hb_004254_120 Hb_004254_120 Hb_005289_030--Hb_004254_120 Hb_010504_020 Hb_010504_020 Hb_005289_030--Hb_010504_020 Hb_005289_030--Hb_002759_060 Hb_002963_010 Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_159809_020--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_159809_020--Hb_002284_240 Hb_000020_060 Hb_000020_060 Hb_159809_020--Hb_000020_060 Hb_159809_020--Hb_010504_020 Hb_000926_250 Hb_000926_250 Hb_159809_020--Hb_000926_250 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040 Hb_000270_370 Hb_000270_370 Hb_027073_040--Hb_000270_370 Hb_033834_040 Hb_033834_040 Hb_027073_040--Hb_033834_040 Hb_000028_140 Hb_000028_140 Hb_027073_040--Hb_000028_140 Hb_000696_310 Hb_000696_310 Hb_027073_040--Hb_000696_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0783 21.2293 15.8378 23.4072 24.334 41.0188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.0854 64.6192 51.9836 27.9301 16.1998

CAGE analysis