Hb_000058_080

Information

Type -
Description -
Location Contig58: 146216-166335
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10990g
description phenylalanyl-tRNA synthetase class IIc family protein
nr
ID XP_012080671.1
description PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID Q94K73
description Phenylalanine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At3g58140 PE=2 SV=1
trembl
ID A0A067KF07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13778 PE=3 SV=1
Gene Ontology
ID GO:0016020
description phenylalanine--trna chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49807: 146229-166417
cDNA
(Sanger)
(ID:Location)		 020_H10.ab1: 146259-155155 , 034_B22.ab1: 146271-155204

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000058_080 0.0 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_000866_050 0.0932622027 - - phosphate transporter [Manihot esculenta]
3 Hb_001792_030 0.1049460446 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
4 Hb_158144_020 0.113963253 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
5 Hb_003581_290 0.1151045303 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
6 Hb_000594_100 0.1234043102 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
7 Hb_003124_120 0.130947531 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
8 Hb_000189_520 0.1320901583 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
9 Hb_003935_080 0.1337431101 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
10 Hb_010128_020 0.1375045685 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
11 Hb_000983_070 0.1404375702 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001373_130 0.1427659833 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000352_220 0.1436898648 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_001621_060 0.1446787913 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
15 Hb_010577_040 0.1447158642 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
16 Hb_000640_260 0.147669321 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
17 Hb_004339_030 0.1496097895 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
18 Hb_000890_080 0.1502185511 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
19 Hb_021313_010 0.1525822206 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
20 Hb_003226_190 0.1526998013 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]

Gene co-expression network

sample Hb_000058_080 Hb_000058_080 Hb_000866_050 Hb_000866_050 Hb_000058_080--Hb_000866_050 Hb_001792_030 Hb_001792_030 Hb_000058_080--Hb_001792_030 Hb_158144_020 Hb_158144_020 Hb_000058_080--Hb_158144_020 Hb_003581_290 Hb_003581_290 Hb_000058_080--Hb_003581_290 Hb_000594_100 Hb_000594_100 Hb_000058_080--Hb_000594_100 Hb_003124_120 Hb_003124_120 Hb_000058_080--Hb_003124_120 Hb_000189_520 Hb_000189_520 Hb_000866_050--Hb_000189_520 Hb_003935_080 Hb_003935_080 Hb_000866_050--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000866_050--Hb_011053_030 Hb_183963_010 Hb_183963_010 Hb_000866_050--Hb_183963_010 Hb_000107_590 Hb_000107_590 Hb_000866_050--Hb_000107_590 Hb_001792_030--Hb_000189_520 Hb_001621_060 Hb_001621_060 Hb_001792_030--Hb_001621_060 Hb_001792_030--Hb_003935_080 Hb_005489_090 Hb_005489_090 Hb_001792_030--Hb_005489_090 Hb_001792_030--Hb_000594_100 Hb_000890_110 Hb_000890_110 Hb_158144_020--Hb_000890_110 Hb_000189_250 Hb_000189_250 Hb_158144_020--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_158144_020--Hb_000640_260 Hb_000402_170 Hb_000402_170 Hb_158144_020--Hb_000402_170 Hb_166127_030 Hb_166127_030 Hb_158144_020--Hb_166127_030 Hb_004339_030 Hb_004339_030 Hb_003581_290--Hb_004339_030 Hb_029920_030 Hb_029920_030 Hb_003581_290--Hb_029920_030 Hb_000816_200 Hb_000816_200 Hb_003581_290--Hb_000816_200 Hb_008147_080 Hb_008147_080 Hb_003581_290--Hb_008147_080 Hb_000008_350 Hb_000008_350 Hb_003581_290--Hb_000008_350 Hb_000594_100--Hb_003935_080 Hb_001373_130 Hb_001373_130 Hb_000594_100--Hb_001373_130 Hb_000594_100--Hb_005489_090 Hb_001124_180 Hb_001124_180 Hb_000594_100--Hb_001124_180 Hb_010577_040 Hb_010577_040 Hb_000594_100--Hb_010577_040 Hb_000983_070 Hb_000983_070 Hb_000594_100--Hb_000983_070 Hb_003124_120--Hb_000816_200 Hb_010128_020 Hb_010128_020 Hb_003124_120--Hb_010128_020 Hb_016461_030 Hb_016461_030 Hb_003124_120--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_003124_120--Hb_001677_220 Hb_003124_120--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_003124_120--Hb_002075_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37786 1.62598 10.9854 8.00629 1.57256 2.47066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41945 5.42926 7.90429 9.49782 32.3919

CAGE analysis