Hb_000058_090

Information

Type -
Description -
Location Contig58: 158925-162643
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016020
description phenylalanine--trna chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 020_H10r.ab1: 155187-166417

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000058_090 0.0 - - -
2 Hb_086336_010 0.1833811411 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
3 Hb_003092_050 0.1899130763 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
4 Hb_001486_060 0.2004703245 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
5 Hb_012633_030 0.2021506338 - - hypothetical protein RCOM_0452240 [Ricinus communis]
6 Hb_000139_510 0.2067392263 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
7 Hb_000019_010 0.2087704846 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]
8 Hb_005288_210 0.2088012568 - - hypothetical protein VITISV_017217 [Vitis vinifera]
9 Hb_078081_010 0.2096355533 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
10 Hb_098795_030 0.2107466416 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
11 Hb_000483_130 0.2120325518 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
12 Hb_000107_550 0.2137844854 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
13 Hb_005181_060 0.2149177801 - - ATP-citrate synthase, putative [Ricinus communis]
14 Hb_007632_130 0.2151101912 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
15 Hb_000793_040 0.2182594753 - - PREDICTED: transcription factor LHW [Jatropha curcas]
16 Hb_000818_080 0.2193471902 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
17 Hb_004607_040 0.2208304508 - - ADP,ATP carrier protein, putative [Ricinus communis]
18 Hb_004958_020 0.2210335776 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
19 Hb_025668_030 0.2220886109 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
20 Hb_029879_120 0.2223116113 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000058_090 Hb_000058_090 Hb_086336_010 Hb_086336_010 Hb_000058_090--Hb_086336_010 Hb_003092_050 Hb_003092_050 Hb_000058_090--Hb_003092_050 Hb_001486_060 Hb_001486_060 Hb_000058_090--Hb_001486_060 Hb_012633_030 Hb_012633_030 Hb_000058_090--Hb_012633_030 Hb_000139_510 Hb_000139_510 Hb_000058_090--Hb_000139_510 Hb_000019_010 Hb_000019_010 Hb_000058_090--Hb_000019_010 Hb_147218_010 Hb_147218_010 Hb_086336_010--Hb_147218_010 Hb_086336_010--Hb_001486_060 Hb_001304_130 Hb_001304_130 Hb_086336_010--Hb_001304_130 Hb_003371_190 Hb_003371_190 Hb_086336_010--Hb_003371_190 Hb_000818_080 Hb_000818_080 Hb_086336_010--Hb_000818_080 Hb_005288_210 Hb_005288_210 Hb_086336_010--Hb_005288_210 Hb_001894_010 Hb_001894_010 Hb_003092_050--Hb_001894_010 Hb_000215_250 Hb_000215_250 Hb_003092_050--Hb_000215_250 Hb_000107_550 Hb_000107_550 Hb_003092_050--Hb_000107_550 Hb_003092_050--Hb_000139_510 Hb_005181_060 Hb_005181_060 Hb_003092_050--Hb_005181_060 Hb_013848_030 Hb_013848_030 Hb_003092_050--Hb_013848_030 Hb_001486_060--Hb_000818_080 Hb_000793_040 Hb_000793_040 Hb_001486_060--Hb_000793_040 Hb_002026_080 Hb_002026_080 Hb_001486_060--Hb_002026_080 Hb_000483_130 Hb_000483_130 Hb_001486_060--Hb_000483_130 Hb_004657_080 Hb_004657_080 Hb_001486_060--Hb_004657_080 Hb_004607_040 Hb_004607_040 Hb_012633_030--Hb_004607_040 Hb_002311_270 Hb_002311_270 Hb_012633_030--Hb_002311_270 Hb_078081_010 Hb_078081_010 Hb_012633_030--Hb_078081_010 Hb_000189_590 Hb_000189_590 Hb_012633_030--Hb_000189_590 Hb_004346_010 Hb_004346_010 Hb_012633_030--Hb_004346_010 Hb_153257_010 Hb_153257_010 Hb_000139_510--Hb_153257_010 Hb_002833_020 Hb_002833_020 Hb_000139_510--Hb_002833_020 Hb_000574_370 Hb_000574_370 Hb_000139_510--Hb_000574_370 Hb_004864_020 Hb_004864_020 Hb_000139_510--Hb_004864_020 Hb_000085_380 Hb_000085_380 Hb_000139_510--Hb_000085_380 Hb_029879_120 Hb_029879_120 Hb_000019_010--Hb_029879_120 Hb_011174_080 Hb_011174_080 Hb_000019_010--Hb_011174_080 Hb_003125_180 Hb_003125_180 Hb_000019_010--Hb_003125_180 Hb_001702_050 Hb_001702_050 Hb_000019_010--Hb_001702_050 Hb_001235_130 Hb_001235_130 Hb_000019_010--Hb_001235_130 Hb_003490_050 Hb_003490_050 Hb_000019_010--Hb_003490_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.182083 0.126595 0.53756 0.0328983 0.128568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0755007 0 0 0.457917 0.354299

CAGE analysis