Hb_000058_110

Information

Type -
Description -
Location Contig58: 181245-185188
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15890g
description POPTRDRAFT_573035; lipid-binding serum glycoprotein
nr
ID XP_012080674.1
description PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Jatropha curcas]
swissprot
ID Q9MAU5
description Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana GN=At1g04970 PE=2 SV=1
trembl
ID A0A067K752
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13781 PE=4 SV=1
Gene Ontology
ID GO:0005615
description bpi lbp family protein at1g04970

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49814: 181346-184750 , PASA_asmbl_49815: 184842-185010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000058_110 0.0 - - PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Jatropha curcas]
2 Hb_002226_080 0.0857165296 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
3 Hb_001440_020 0.0932978229 - - exocyst componenet sec8, putative [Ricinus communis]
4 Hb_009252_030 0.0980537102 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
5 Hb_001491_030 0.1006919237 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
6 Hb_005977_100 0.100794914 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
7 Hb_000359_190 0.1010001839 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
8 Hb_000390_050 0.101365053 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
9 Hb_022250_010 0.1020032882 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
10 Hb_000056_130 0.1021973973 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
11 Hb_001157_230 0.1038315415 - - Protein AFR, putative [Ricinus communis]
12 Hb_006355_020 0.1053835685 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
13 Hb_007765_040 0.1060506509 - - Cytosolic enolase isoform 3 [Theobroma cacao]
14 Hb_001876_040 0.1070888381 - - PREDICTED: mucin-5B [Jatropha curcas]
15 Hb_012518_070 0.1079772679 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
16 Hb_031931_020 0.1080894723 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
17 Hb_008511_020 0.1099227665 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
18 Hb_001029_040 0.1112807695 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
19 Hb_000960_040 0.112364536 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
20 Hb_002902_130 0.1128575137 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_000058_110 Hb_000058_110 Hb_002226_080 Hb_002226_080 Hb_000058_110--Hb_002226_080 Hb_001440_020 Hb_001440_020 Hb_000058_110--Hb_001440_020 Hb_009252_030 Hb_009252_030 Hb_000058_110--Hb_009252_030 Hb_001491_030 Hb_001491_030 Hb_000058_110--Hb_001491_030 Hb_005977_100 Hb_005977_100 Hb_000058_110--Hb_005977_100 Hb_000359_190 Hb_000359_190 Hb_000058_110--Hb_000359_190 Hb_000056_130 Hb_000056_130 Hb_002226_080--Hb_000056_130 Hb_000004_020 Hb_000004_020 Hb_002226_080--Hb_000004_020 Hb_009569_040 Hb_009569_040 Hb_002226_080--Hb_009569_040 Hb_002928_090 Hb_002928_090 Hb_002226_080--Hb_002928_090 Hb_001946_180 Hb_001946_180 Hb_002226_080--Hb_001946_180 Hb_012518_070 Hb_012518_070 Hb_001440_020--Hb_012518_070 Hb_012114_100 Hb_012114_100 Hb_001440_020--Hb_012114_100 Hb_008511_020 Hb_008511_020 Hb_001440_020--Hb_008511_020 Hb_003097_140 Hb_003097_140 Hb_001440_020--Hb_003097_140 Hb_002675_030 Hb_002675_030 Hb_001440_020--Hb_002675_030 Hb_001329_250 Hb_001329_250 Hb_001440_020--Hb_001329_250 Hb_001029_040 Hb_001029_040 Hb_009252_030--Hb_001029_040 Hb_001754_020 Hb_001754_020 Hb_009252_030--Hb_001754_020 Hb_009252_030--Hb_005977_100 Hb_000265_140 Hb_000265_140 Hb_009252_030--Hb_000265_140 Hb_009252_030--Hb_001946_180 Hb_007765_040 Hb_007765_040 Hb_001491_030--Hb_007765_040 Hb_001491_030--Hb_000056_130 Hb_001491_030--Hb_002226_080 Hb_001675_190 Hb_001675_190 Hb_001491_030--Hb_001675_190 Hb_000359_310 Hb_000359_310 Hb_001491_030--Hb_000359_310 Hb_000049_020 Hb_000049_020 Hb_005977_100--Hb_000049_020 Hb_007545_010 Hb_007545_010 Hb_005977_100--Hb_007545_010 Hb_011310_110 Hb_011310_110 Hb_005977_100--Hb_011310_110 Hb_000212_420 Hb_000212_420 Hb_005977_100--Hb_000212_420 Hb_003209_130 Hb_003209_130 Hb_005977_100--Hb_003209_130 Hb_004102_170 Hb_004102_170 Hb_005977_100--Hb_004102_170 Hb_000358_100 Hb_000358_100 Hb_000359_190--Hb_000358_100 Hb_044486_020 Hb_044486_020 Hb_000359_190--Hb_044486_020 Hb_000020_160 Hb_000020_160 Hb_000359_190--Hb_000020_160 Hb_183086_030 Hb_183086_030 Hb_000359_190--Hb_183086_030 Hb_021977_010 Hb_021977_010 Hb_000359_190--Hb_021977_010 Hb_000103_290 Hb_000103_290 Hb_000359_190--Hb_000103_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.47763 5.69587 6.38431 15.6251 8.76172 6.24284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49459 3.30855 3.99042 5.62321 11.9648

CAGE analysis