Hb_000059_010

Information

Type -
Description -
Location Contig59: 14620-21078
Sequence    

Annotation

kegg
ID rcu:RCOM_0559630
description amino acid binding protein, putative
nr
ID XP_002520259.1
description amino acid binding protein, putative [Ricinus communis]
swissprot
ID O49285
description ACT domain-containing protein ACR3 OS=Arabidopsis thaliana GN=ACR3 PE=2 SV=1
trembl
ID B9S2P0
description Amino acid binding protein, putative OS=Ricinus communis GN=RCOM_0559630 PE=4 SV=1
Gene Ontology
ID GO:0005829
description act domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50151: 14732-21077
cDNA
(Sanger)
(ID:Location)		 027_F22.ab1: 14732-18725

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_010 0.0 - - amino acid binding protein, putative [Ricinus communis]
2 Hb_000815_290 0.1111624342 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
3 Hb_001102_210 0.1279780524 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
4 Hb_130719_010 0.1474316493 - - V-type proton ATPase subunit E [Hevea brasiliensis]
5 Hb_002078_440 0.1512982368 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
6 Hb_001377_420 0.1514685063 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000771_060 0.1519878466 - - PREDICTED: spermine synthase [Jatropha curcas]
8 Hb_005356_040 0.1557390488 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_001171_050 0.1582349878 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
10 Hb_005496_090 0.1599814447 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
11 Hb_002016_080 0.1644240759 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
12 Hb_000340_310 0.1644277277 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
13 Hb_005144_110 0.1648385489 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
14 Hb_000140_360 0.1650124985 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
15 Hb_117807_010 0.166365576 - - PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
16 Hb_011021_040 0.1690997486 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
17 Hb_002783_110 0.1710778694 - - Zeamatin precursor, putative [Ricinus communis]
18 Hb_028487_170 0.1728571692 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
19 Hb_000928_110 0.1748573556 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
20 Hb_003783_030 0.1766546024 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]

Gene co-expression network

sample Hb_000059_010 Hb_000059_010 Hb_000815_290 Hb_000815_290 Hb_000059_010--Hb_000815_290 Hb_001102_210 Hb_001102_210 Hb_000059_010--Hb_001102_210 Hb_130719_010 Hb_130719_010 Hb_000059_010--Hb_130719_010 Hb_002078_440 Hb_002078_440 Hb_000059_010--Hb_002078_440 Hb_001377_420 Hb_001377_420 Hb_000059_010--Hb_001377_420 Hb_000771_060 Hb_000771_060 Hb_000059_010--Hb_000771_060 Hb_000815_290--Hb_000771_060 Hb_005054_260 Hb_005054_260 Hb_000815_290--Hb_005054_260 Hb_005496_090 Hb_005496_090 Hb_000815_290--Hb_005496_090 Hb_004089_020 Hb_004089_020 Hb_000815_290--Hb_004089_020 Hb_000815_290--Hb_130719_010 Hb_001102_210--Hb_002078_440 Hb_013405_140 Hb_013405_140 Hb_001102_210--Hb_013405_140 Hb_000140_360 Hb_000140_360 Hb_001102_210--Hb_000140_360 Hb_000340_310 Hb_000340_310 Hb_001102_210--Hb_000340_310 Hb_001102_210--Hb_000815_290 Hb_130719_010--Hb_005496_090 Hb_000056_250 Hb_000056_250 Hb_130719_010--Hb_000056_250 Hb_003291_020 Hb_003291_020 Hb_130719_010--Hb_003291_020 Hb_001123_160 Hb_001123_160 Hb_130719_010--Hb_001123_160 Hb_000685_050 Hb_000685_050 Hb_130719_010--Hb_000685_050 Hb_130719_010--Hb_005054_260 Hb_002078_440--Hb_013405_140 Hb_003783_030 Hb_003783_030 Hb_002078_440--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_002078_440--Hb_011021_040 Hb_002078_440--Hb_000340_310 Hb_002078_440--Hb_000140_360 Hb_158092_010 Hb_158092_010 Hb_001377_420--Hb_158092_010 Hb_001242_050 Hb_001242_050 Hb_001377_420--Hb_001242_050 Hb_001377_420--Hb_005496_090 Hb_000928_110 Hb_000928_110 Hb_001377_420--Hb_000928_110 Hb_005356_040 Hb_005356_040 Hb_001377_420--Hb_005356_040 Hb_003462_120 Hb_003462_120 Hb_001377_420--Hb_003462_120 Hb_000428_060 Hb_000428_060 Hb_000771_060--Hb_000428_060 Hb_000008_400 Hb_000008_400 Hb_000771_060--Hb_000008_400 Hb_028049_010 Hb_028049_010 Hb_000771_060--Hb_028049_010 Hb_000739_140 Hb_000739_140 Hb_000771_060--Hb_000739_140 Hb_001016_100 Hb_001016_100 Hb_000771_060--Hb_001016_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18171 17.0392 15.4995 31.6935 3.59958 0.675865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4968 45.1564 59.7646 27.9619 19.3713

CAGE analysis