Hb_000059_040

Information

Type -
Description -
Location Contig59: 32890-34415
Sequence    

Annotation

kegg
ID tcc:TCM_020504
description hypothetical protein
nr
ID XP_007034594.1
description Uncharacterized protein TCM_020504 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EKF2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_020504 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_040 0.0 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
2 Hb_002505_040 0.126990089 - - -
3 Hb_002073_040 0.1277757794 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000009_590 0.1456153889 - - PREDICTED: prolyl endopeptidase-like isoform X1 [Jatropha curcas]
5 Hb_004586_190 0.1501880456 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
6 Hb_010315_050 0.154695221 - - hypothetical protein JCGZ_25247 [Jatropha curcas]
7 Hb_006588_090 0.1651952842 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
8 Hb_005625_040 0.1670010434 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
9 Hb_006740_020 0.169985881 - - PREDICTED: bis(5'-adenosyl)-triphosphatase [Jatropha curcas]
10 Hb_006816_320 0.1724385355 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
11 Hb_063100_010 0.1730494893 - - TATA box-binding protein-associated factor [Populus trichocarpa]
12 Hb_001584_170 0.173573455 - - neutral/alkaline invertase [Manihot esculenta]
13 Hb_005839_120 0.1736295625 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
14 Hb_025048_030 0.1744945759 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
15 Hb_010298_020 0.1747817464 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
16 Hb_000125_120 0.1775031712 transcription factor TF Family: mTERF -
17 Hb_001720_010 0.177799632 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_000465_310 0.1781689565 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006478_110 0.1784992627 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
20 Hb_000077_080 0.1791492509 - - PREDICTED: uncharacterized protein LOC105646929 [Jatropha curcas]

Gene co-expression network

sample Hb_000059_040 Hb_000059_040 Hb_002505_040 Hb_002505_040 Hb_000059_040--Hb_002505_040 Hb_002073_040 Hb_002073_040 Hb_000059_040--Hb_002073_040 Hb_000009_590 Hb_000009_590 Hb_000059_040--Hb_000009_590 Hb_004586_190 Hb_004586_190 Hb_000059_040--Hb_004586_190 Hb_010315_050 Hb_010315_050 Hb_000059_040--Hb_010315_050 Hb_006588_090 Hb_006588_090 Hb_000059_040--Hb_006588_090 Hb_002505_040--Hb_000009_590 Hb_002505_040--Hb_002073_040 Hb_000008_330 Hb_000008_330 Hb_002505_040--Hb_000008_330 Hb_007803_010 Hb_007803_010 Hb_002505_040--Hb_007803_010 Hb_003073_200 Hb_003073_200 Hb_002505_040--Hb_003073_200 Hb_002073_040--Hb_000009_590 Hb_004129_130 Hb_004129_130 Hb_002073_040--Hb_004129_130 Hb_029866_130 Hb_029866_130 Hb_002073_040--Hb_029866_130 Hb_000009_550 Hb_000009_550 Hb_002073_040--Hb_000009_550 Hb_000009_590--Hb_003073_200 Hb_000041_220 Hb_000041_220 Hb_000009_590--Hb_000041_220 Hb_006816_320 Hb_006816_320 Hb_000009_590--Hb_006816_320 Hb_000236_300 Hb_000236_300 Hb_000009_590--Hb_000236_300 Hb_000398_190 Hb_000398_190 Hb_000009_590--Hb_000398_190 Hb_000172_400 Hb_000172_400 Hb_004586_190--Hb_000172_400 Hb_003638_030 Hb_003638_030 Hb_004586_190--Hb_003638_030 Hb_002207_100 Hb_002207_100 Hb_004586_190--Hb_002207_100 Hb_002007_270 Hb_002007_270 Hb_004586_190--Hb_002007_270 Hb_000371_110 Hb_000371_110 Hb_004586_190--Hb_000371_110 Hb_026048_100 Hb_026048_100 Hb_004586_190--Hb_026048_100 Hb_010315_050--Hb_004586_190 Hb_005839_120 Hb_005839_120 Hb_010315_050--Hb_005839_120 Hb_001277_220 Hb_001277_220 Hb_010315_050--Hb_001277_220 Hb_011671_330 Hb_011671_330 Hb_010315_050--Hb_011671_330 Hb_006478_110 Hb_006478_110 Hb_010315_050--Hb_006478_110 Hb_000465_310 Hb_000465_310 Hb_006588_090--Hb_000465_310 Hb_005333_020 Hb_005333_020 Hb_006588_090--Hb_005333_020 Hb_183510_010 Hb_183510_010 Hb_006588_090--Hb_183510_010 Hb_007416_200 Hb_007416_200 Hb_006588_090--Hb_007416_200 Hb_001720_010 Hb_001720_010 Hb_006588_090--Hb_001720_010 Hb_025048_030 Hb_025048_030 Hb_006588_090--Hb_025048_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18622 4.89108 1.22975 0.180955 6.11809 7.72121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.69917 4.59388 2.55694 0.887451 0

CAGE analysis