Hb_000059_080

Information

Type -
Description -
Location Contig59: 78034-79035
Sequence    

Annotation

kegg
ID rcu:RCOM_0559550
description hypothetical protein
nr
ID XP_012066108.1
description PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LG03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25260 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC105629177

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50159: 77976-78601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_080 0.0 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
2 Hb_003212_010 0.1067563537 - - sucrose transporter 4 [Hevea brasiliensis]
3 Hb_007320_020 0.1207933322 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
4 Hb_003767_010 0.1274082402 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
5 Hb_000264_340 0.1291116499 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
6 Hb_005470_040 0.1355030594 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
7 Hb_109489_010 0.1355669419 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
8 Hb_001971_020 0.1369567969 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
9 Hb_000377_160 0.1399224262 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
10 Hb_000866_390 0.1426744561 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
11 Hb_004713_050 0.1479092347 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]
12 Hb_012023_010 0.1540724385 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001411_100 0.1568681343 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
14 Hb_002217_200 0.1570189138 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
15 Hb_003106_210 0.1610086412 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
16 Hb_011242_070 0.1615170935 - - beta-cyanoalanine synthase [Hevea brasiliensis]
17 Hb_001357_360 0.1615752876 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000603_120 0.1617984239 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
19 Hb_002217_070 0.1624769936 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
20 Hb_000649_280 0.1644746713 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000059_080 Hb_000059_080 Hb_003212_010 Hb_003212_010 Hb_000059_080--Hb_003212_010 Hb_007320_020 Hb_007320_020 Hb_000059_080--Hb_007320_020 Hb_003767_010 Hb_003767_010 Hb_000059_080--Hb_003767_010 Hb_000264_340 Hb_000264_340 Hb_000059_080--Hb_000264_340 Hb_005470_040 Hb_005470_040 Hb_000059_080--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000059_080--Hb_109489_010 Hb_003212_010--Hb_000264_340 Hb_003212_010--Hb_003767_010 Hb_000597_080 Hb_000597_080 Hb_003212_010--Hb_000597_080 Hb_003212_010--Hb_109489_010 Hb_003212_010--Hb_005470_040 Hb_000685_040 Hb_000685_040 Hb_007320_020--Hb_000685_040 Hb_001971_020 Hb_001971_020 Hb_007320_020--Hb_001971_020 Hb_007320_020--Hb_003767_010 Hb_010812_140 Hb_010812_140 Hb_007320_020--Hb_010812_140 Hb_000377_160 Hb_000377_160 Hb_007320_020--Hb_000377_160 Hb_003767_010--Hb_000377_160 Hb_000649_280 Hb_000649_280 Hb_003767_010--Hb_000649_280 Hb_029866_110 Hb_029866_110 Hb_003767_010--Hb_029866_110 Hb_002217_200 Hb_002217_200 Hb_003767_010--Hb_002217_200 Hb_123560_050 Hb_123560_050 Hb_003767_010--Hb_123560_050 Hb_003767_010--Hb_109489_010 Hb_000264_340--Hb_005470_040 Hb_000264_340--Hb_109489_010 Hb_000264_340--Hb_123560_050 Hb_000264_340--Hb_000597_080 Hb_000264_340--Hb_001971_020 Hb_031949_010 Hb_031949_010 Hb_005470_040--Hb_031949_010 Hb_001357_360 Hb_001357_360 Hb_005470_040--Hb_001357_360 Hb_005470_040--Hb_000377_160 Hb_005470_040--Hb_109489_010 Hb_005470_040--Hb_123560_050 Hb_109489_010--Hb_123560_050 Hb_109489_010--Hb_029866_110 Hb_000808_220 Hb_000808_220 Hb_109489_010--Hb_000808_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0220719 18.0221 1.61016 5.15482 0.292543 0.311606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.202201 0.477092 0.219567 17.4585 17.0827

CAGE analysis