Hb_000059_140

Information

Type -
Description -
Location Contig59: 132275-135402
Sequence    

Annotation

kegg
ID rcu:RCOM_0559410
description rnase h, putative (EC:3.1.13.1)
nr
ID XP_002520248.1
description rnase h, putative [Ricinus communis]
swissprot
ID Q8L7M4
description Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2 SV=2
trembl
ID B9S2M9
description Rnase h, putative OS=Ricinus communis GN=RCOM_0559410 PE=4 SV=1
Gene Ontology
ID GO:0003676
description small rna degrading nuclease 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50167: 132080-153079 , PASA_asmbl_50168: 134339-134493
cDNA
(Sanger)
(ID:Location)		 005_I18.ab1: 134732-153079 , 030_C24.ab1: 134733-153079

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_140 0.0 - - rnase h, putative [Ricinus communis]
2 Hb_032278_020 0.065584927 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
3 Hb_000334_270 0.066484639 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
4 Hb_001357_380 0.0673590523 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_007520_030 0.0683716844 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
6 Hb_009222_010 0.070665113 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_001486_340 0.0726883998 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
8 Hb_005892_030 0.0730878745 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
9 Hb_001085_320 0.0747633678 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
10 Hb_007558_120 0.0763946976 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
11 Hb_000913_050 0.0767699388 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
12 Hb_030131_040 0.0781463537 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
13 Hb_050847_020 0.079170784 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_006355_010 0.0801689888 - - PREDICTED: protein NLRC3 [Jatropha curcas]
15 Hb_002044_060 0.0806742807 - - elongation factor ts, putative [Ricinus communis]
16 Hb_000771_180 0.0807206571 - - polypyrimidine tract binding protein, putative [Ricinus communis]
17 Hb_131646_010 0.0807816577 - - protein arginine n-methyltransferase, putative [Ricinus communis]
18 Hb_001433_070 0.0813786762 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
19 Hb_002918_060 0.0818223934 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
20 Hb_001828_160 0.0821365208 - - hypothetical protein F775_31105 [Aegilops tauschii]

Gene co-expression network

sample Hb_000059_140 Hb_000059_140 Hb_032278_020 Hb_032278_020 Hb_000059_140--Hb_032278_020 Hb_000334_270 Hb_000334_270 Hb_000059_140--Hb_000334_270 Hb_001357_380 Hb_001357_380 Hb_000059_140--Hb_001357_380 Hb_007520_030 Hb_007520_030 Hb_000059_140--Hb_007520_030 Hb_009222_010 Hb_009222_010 Hb_000059_140--Hb_009222_010 Hb_001486_340 Hb_001486_340 Hb_000059_140--Hb_001486_340 Hb_000648_100 Hb_000648_100 Hb_032278_020--Hb_000648_100 Hb_000923_080 Hb_000923_080 Hb_032278_020--Hb_000923_080 Hb_011930_080 Hb_011930_080 Hb_032278_020--Hb_011930_080 Hb_001102_080 Hb_001102_080 Hb_032278_020--Hb_001102_080 Hb_004209_020 Hb_004209_020 Hb_032278_020--Hb_004209_020 Hb_000926_190 Hb_000926_190 Hb_000334_270--Hb_000926_190 Hb_010068_040 Hb_010068_040 Hb_000334_270--Hb_010068_040 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_033153_070 Hb_033153_070 Hb_000334_270--Hb_033153_070 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_002175_030 Hb_002175_030 Hb_000334_270--Hb_002175_030 Hb_000211_110 Hb_000211_110 Hb_001357_380--Hb_000211_110 Hb_011942_080 Hb_011942_080 Hb_001357_380--Hb_011942_080 Hb_000106_130 Hb_000106_130 Hb_001357_380--Hb_000106_130 Hb_001357_380--Hb_001486_340 Hb_001894_030 Hb_001894_030 Hb_001357_380--Hb_001894_030 Hb_002783_310 Hb_002783_310 Hb_007520_030--Hb_002783_310 Hb_008406_110 Hb_008406_110 Hb_007520_030--Hb_008406_110 Hb_001172_010 Hb_001172_010 Hb_007520_030--Hb_001172_010 Hb_000771_180 Hb_000771_180 Hb_007520_030--Hb_000771_180 Hb_001502_060 Hb_001502_060 Hb_007520_030--Hb_001502_060 Hb_000785_030 Hb_000785_030 Hb_009222_010--Hb_000785_030 Hb_011848_010 Hb_011848_010 Hb_009222_010--Hb_011848_010 Hb_000189_340 Hb_000189_340 Hb_009222_010--Hb_000189_340 Hb_009222_010--Hb_011942_080 Hb_003467_010 Hb_003467_010 Hb_009222_010--Hb_003467_010 Hb_000538_100 Hb_000538_100 Hb_001486_340--Hb_000538_100 Hb_000179_030 Hb_000179_030 Hb_001486_340--Hb_000179_030 Hb_001486_340--Hb_006355_010 Hb_000308_030 Hb_000308_030 Hb_001486_340--Hb_000308_030 Hb_000174_110 Hb_000174_110 Hb_001486_340--Hb_000174_110 Hb_006620_020 Hb_006620_020 Hb_001486_340--Hb_006620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3888 14.6726 14.6482 10.0781 28.3882 26.4848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4279 12.5562 6.98102 14.7577 8.01531

CAGE analysis