Hb_000059_150

Information

Type -
Description -
Location Contig59: 147220-153137
Sequence    

Annotation

kegg
ID zma:100501283
description hypothetical protein
nr
ID XP_007019343.1
description Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FI19
description Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_035363 PE=4 SV=1
Gene Ontology
ID GO:0003676
description small rna degrading nuclease 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50167: 132080-153079
cDNA
(Sanger)
(ID:Location)		 005_I18.ab1: 134732-153079 , 030_C24.ab1: 134733-153079

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_150 0.0 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
2 Hb_000173_510 0.0680742102 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
3 Hb_000743_040 0.068970426 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
4 Hb_002273_130 0.0698822936 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
5 Hb_000600_070 0.0705683428 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
6 Hb_010381_060 0.0730613871 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
7 Hb_004450_010 0.0733220065 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
8 Hb_003464_020 0.0742346082 - - srpk, putative [Ricinus communis]
9 Hb_001300_070 0.0748243196 - - OTU domain-containing protein 6B, putative [Ricinus communis]
10 Hb_000567_050 0.0752484881 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
11 Hb_009535_020 0.0806749 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
12 Hb_000329_090 0.081667979 - - arginase, putative [Ricinus communis]
13 Hb_003428_070 0.0819829628 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
14 Hb_002477_130 0.0820167135 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001866_110 0.0827024536 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
16 Hb_015763_030 0.0833953585 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008595_010 0.0846114985 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
18 Hb_000347_130 0.0848235555 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
19 Hb_003581_120 0.0853339715 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
20 Hb_000023_190 0.0859361273 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]

Gene co-expression network

sample Hb_000059_150 Hb_000059_150 Hb_000173_510 Hb_000173_510 Hb_000059_150--Hb_000173_510 Hb_000743_040 Hb_000743_040 Hb_000059_150--Hb_000743_040 Hb_002273_130 Hb_002273_130 Hb_000059_150--Hb_002273_130 Hb_000600_070 Hb_000600_070 Hb_000059_150--Hb_000600_070 Hb_010381_060 Hb_010381_060 Hb_000059_150--Hb_010381_060 Hb_004450_010 Hb_004450_010 Hb_000059_150--Hb_004450_010 Hb_003428_070 Hb_003428_070 Hb_000173_510--Hb_003428_070 Hb_000567_010 Hb_000567_010 Hb_000173_510--Hb_000567_010 Hb_000768_110 Hb_000768_110 Hb_000173_510--Hb_000768_110 Hb_000160_040 Hb_000160_040 Hb_000173_510--Hb_000160_040 Hb_000283_070 Hb_000283_070 Hb_000173_510--Hb_000283_070 Hb_000329_090 Hb_000329_090 Hb_000743_040--Hb_000329_090 Hb_000743_040--Hb_000600_070 Hb_000743_040--Hb_003428_070 Hb_000567_050 Hb_000567_050 Hb_000743_040--Hb_000567_050 Hb_000072_350 Hb_000072_350 Hb_000743_040--Hb_000072_350 Hb_000743_040--Hb_010381_060 Hb_030131_040 Hb_030131_040 Hb_002273_130--Hb_030131_040 Hb_001341_120 Hb_001341_120 Hb_002273_130--Hb_001341_120 Hb_001541_090 Hb_001541_090 Hb_002273_130--Hb_001541_090 Hb_000076_270 Hb_000076_270 Hb_002273_130--Hb_000076_270 Hb_001300_070 Hb_001300_070 Hb_002273_130--Hb_001300_070 Hb_009535_020 Hb_009535_020 Hb_000600_070--Hb_009535_020 Hb_000347_130 Hb_000347_130 Hb_000600_070--Hb_000347_130 Hb_000600_070--Hb_000567_050 Hb_000600_070--Hb_003428_070 Hb_000023_190 Hb_000023_190 Hb_000600_070--Hb_000023_190 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_002044_060 Hb_002044_060 Hb_004450_010--Hb_002044_060 Hb_000956_030 Hb_000956_030 Hb_004450_010--Hb_000956_030 Hb_004450_010--Hb_000768_110 Hb_004370_030 Hb_004370_030 Hb_004450_010--Hb_004370_030 Hb_002272_180 Hb_002272_180 Hb_004450_010--Hb_002272_180 Hb_001221_040 Hb_001221_040 Hb_004450_010--Hb_001221_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3823 7.1884 4.75833 7.15625 20.2414 21.332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.75551 6.46512 6.82308 7.99035 6.14397

CAGE analysis