Hb_000059_160

Information

Type -
Description -
Location Contig59: 153927-156105
Sequence    

Annotation

kegg
ID pop:POPTR_0005s03350g
description resistance family protein
nr
ID KDP38817.1
description hypothetical protein JCGZ_04974 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067KRS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04974 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_160 0.0 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
2 Hb_007858_030 0.1113657457 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
3 Hb_004924_030 0.1438816368 - - -
4 Hb_091913_010 0.158870527 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
5 Hb_039650_030 0.1776537489 - - hypothetical protein RCOM_2128750 [Ricinus communis]
6 Hb_008897_020 0.1788008375 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Musa acuminata subsp. malaccensis]
7 Hb_000175_250 0.1831157836 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
8 Hb_002284_040 0.184088783 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_045414_010 0.1911672339 - - unnamed protein product [Vitis vinifera]
10 Hb_000205_220 0.1919956509 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
11 Hb_164146_010 0.1985212456 - - -
12 Hb_005545_080 0.199868604 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
13 Hb_006873_030 0.2030347693 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_001004_010 0.2091828628 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010091_040 0.2117928863 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
16 Hb_007328_010 0.2176471641 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
17 Hb_000522_120 0.2235881221 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
18 Hb_005643_020 0.224594368 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
19 Hb_028841_020 0.2262092504 - - hypothetical protein CISIN_1g041345mg [Citrus sinensis]
20 Hb_113396_020 0.2268002063 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]

Gene co-expression network

sample Hb_000059_160 Hb_000059_160 Hb_007858_030 Hb_007858_030 Hb_000059_160--Hb_007858_030 Hb_004924_030 Hb_004924_030 Hb_000059_160--Hb_004924_030 Hb_091913_010 Hb_091913_010 Hb_000059_160--Hb_091913_010 Hb_039650_030 Hb_039650_030 Hb_000059_160--Hb_039650_030 Hb_008897_020 Hb_008897_020 Hb_000059_160--Hb_008897_020 Hb_000175_250 Hb_000175_250 Hb_000059_160--Hb_000175_250 Hb_000205_220 Hb_000205_220 Hb_007858_030--Hb_000205_220 Hb_010091_040 Hb_010091_040 Hb_007858_030--Hb_010091_040 Hb_052764_010 Hb_052764_010 Hb_007858_030--Hb_052764_010 Hb_002284_040 Hb_002284_040 Hb_007858_030--Hb_002284_040 Hb_007858_030--Hb_091913_010 Hb_004924_030--Hb_039650_030 Hb_004924_030--Hb_000175_250 Hb_005545_080 Hb_005545_080 Hb_004924_030--Hb_005545_080 Hb_000465_100 Hb_000465_100 Hb_004924_030--Hb_000465_100 Hb_006873_030 Hb_006873_030 Hb_004924_030--Hb_006873_030 Hb_091913_010--Hb_008897_020 Hb_001677_130 Hb_001677_130 Hb_091913_010--Hb_001677_130 Hb_007328_010 Hb_007328_010 Hb_091913_010--Hb_007328_010 Hb_045414_010 Hb_045414_010 Hb_091913_010--Hb_045414_010 Hb_000117_110 Hb_000117_110 Hb_091913_010--Hb_000117_110 Hb_091913_010--Hb_039650_030 Hb_039650_030--Hb_000175_250 Hb_000247_150 Hb_000247_150 Hb_039650_030--Hb_000247_150 Hb_039650_030--Hb_006873_030 Hb_035677_010 Hb_035677_010 Hb_039650_030--Hb_035677_010 Hb_039650_030--Hb_007328_010 Hb_113396_020 Hb_113396_020 Hb_008897_020--Hb_113396_020 Hb_008897_020--Hb_007328_010 Hb_000563_380 Hb_000563_380 Hb_008897_020--Hb_000563_380 Hb_048538_010 Hb_048538_010 Hb_008897_020--Hb_048538_010 Hb_008897_020--Hb_045414_010 Hb_028841_020 Hb_028841_020 Hb_000175_250--Hb_028841_020 Hb_000175_250--Hb_007328_010 Hb_012496_010 Hb_012496_010 Hb_000175_250--Hb_012496_010 Hb_141990_050 Hb_141990_050 Hb_000175_250--Hb_141990_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.07584 0.19263 0 0 0.00959751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00709644 0.150763

CAGE analysis