Hb_000059_220

Information

Type -
Description -
Location Contig59: 224467-226182
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14100g
description POPTRDRAFT_254300; calcineurin B-like-interacting protein kinase
nr
ID XP_012089703.1
description PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
swissprot
ID Q7X996
description CBL-interacting protein kinase 2 OS=Oryza sativa subsp. japonica GN=CIPK2 PE=2 SV=1
trembl
ID A0A067JTC9
description Non-specific serine/threonine protein kinase OS=Jatropha curcas GN=JCGZ_00371 PE=4 SV=1
Gene Ontology
ID GO:0004674
description cbl-interacting protein kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50172: 223169-226301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_220 0.0 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
2 Hb_000997_400 0.0659920722 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
3 Hb_006501_040 0.0731645219 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
4 Hb_000179_210 0.0786498566 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
5 Hb_178968_110 0.0843083244 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
6 Hb_000614_230 0.0849035532 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
7 Hb_000297_200 0.0873684361 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
8 Hb_000836_070 0.0891439981 - - protein binding protein, putative [Ricinus communis]
9 Hb_000457_150 0.0891729732 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
10 Hb_005532_060 0.0904270446 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
11 Hb_003266_130 0.0911537565 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
12 Hb_001158_140 0.0934678462 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
13 Hb_131864_040 0.0935950579 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
14 Hb_000236_140 0.0936164491 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
15 Hb_001329_300 0.0937717763 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
16 Hb_003408_030 0.0953729311 - - PREDICTED: protein YIF1B [Jatropha curcas]
17 Hb_000223_150 0.0956737182 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
18 Hb_003018_190 0.0957477295 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
19 Hb_163145_020 0.0966703627 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
20 Hb_004128_180 0.0969002839 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000059_220 Hb_000059_220 Hb_000997_400 Hb_000997_400 Hb_000059_220--Hb_000997_400 Hb_006501_040 Hb_006501_040 Hb_000059_220--Hb_006501_040 Hb_000179_210 Hb_000179_210 Hb_000059_220--Hb_000179_210 Hb_178968_110 Hb_178968_110 Hb_000059_220--Hb_178968_110 Hb_000614_230 Hb_000614_230 Hb_000059_220--Hb_000614_230 Hb_000297_200 Hb_000297_200 Hb_000059_220--Hb_000297_200 Hb_000997_400--Hb_000297_200 Hb_003018_190 Hb_003018_190 Hb_000997_400--Hb_003018_190 Hb_000482_010 Hb_000482_010 Hb_000997_400--Hb_000482_010 Hb_000457_150 Hb_000457_150 Hb_000997_400--Hb_000457_150 Hb_010710_040 Hb_010710_040 Hb_000997_400--Hb_010710_040 Hb_006501_040--Hb_000179_210 Hb_006501_040--Hb_178968_110 Hb_003266_130 Hb_003266_130 Hb_006501_040--Hb_003266_130 Hb_006501_040--Hb_000297_200 Hb_006501_040--Hb_000457_150 Hb_000179_210--Hb_178968_110 Hb_001085_170 Hb_001085_170 Hb_000179_210--Hb_001085_170 Hb_000179_210--Hb_000457_150 Hb_003297_030 Hb_003297_030 Hb_000179_210--Hb_003297_030 Hb_178968_110--Hb_003266_130 Hb_005532_060 Hb_005532_060 Hb_178968_110--Hb_005532_060 Hb_178968_110--Hb_000457_150 Hb_178968_110--Hb_000614_230 Hb_010172_050 Hb_010172_050 Hb_178968_110--Hb_010172_050 Hb_008695_210 Hb_008695_210 Hb_000614_230--Hb_008695_210 Hb_000567_260 Hb_000567_260 Hb_000614_230--Hb_000567_260 Hb_001329_300 Hb_001329_300 Hb_000614_230--Hb_001329_300 Hb_002006_090 Hb_002006_090 Hb_000614_230--Hb_002006_090 Hb_000614_230--Hb_003266_130 Hb_000614_230--Hb_001085_170 Hb_000297_200--Hb_000457_150 Hb_029584_130 Hb_029584_130 Hb_000297_200--Hb_029584_130 Hb_000935_050 Hb_000935_050 Hb_000297_200--Hb_000935_050 Hb_000007_150 Hb_000007_150 Hb_000297_200--Hb_000007_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
285.637 121.237 32.1309 89.0135 245.807 244.096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
274.117 357.588 612.355 86.7872 88.4299

CAGE analysis