Hb_000059_230

Information

Type -
Description -
Location Contig59: 228029-234401
Sequence    

Annotation

kegg
ID rcu:RCOM_0215600
description hypothetical protein
nr
ID XP_012089702.1
description PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJ13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50175: 231647-234389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_230 0.0 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
2 Hb_006839_010 0.0405347404 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
3 Hb_009288_020 0.0619366842 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
4 Hb_000684_350 0.0637773498 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
5 Hb_001377_100 0.0641898053 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
6 Hb_012055_110 0.0642680517 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
7 Hb_003040_050 0.066729244 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
8 Hb_000958_050 0.0674731438 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
9 Hb_000066_150 0.0693814317 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
10 Hb_133702_020 0.0708785463 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_005701_050 0.072588459 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
12 Hb_002007_110 0.07276458 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
13 Hb_011174_020 0.073363953 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
14 Hb_001133_030 0.0736271751 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
15 Hb_000538_280 0.0747699072 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
16 Hb_012244_020 0.0747870877 - - calpain, putative [Ricinus communis]
17 Hb_000358_220 0.0753073527 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
18 Hb_004032_200 0.0778452623 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
19 Hb_001648_020 0.077997514 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
20 Hb_003805_040 0.0788607665 - - Sacsin [Glycine soja]

Gene co-expression network

sample Hb_000059_230 Hb_000059_230 Hb_006839_010 Hb_006839_010 Hb_000059_230--Hb_006839_010 Hb_009288_020 Hb_009288_020 Hb_000059_230--Hb_009288_020 Hb_000684_350 Hb_000684_350 Hb_000059_230--Hb_000684_350 Hb_001377_100 Hb_001377_100 Hb_000059_230--Hb_001377_100 Hb_012055_110 Hb_012055_110 Hb_000059_230--Hb_012055_110 Hb_003040_050 Hb_003040_050 Hb_000059_230--Hb_003040_050 Hb_006839_010--Hb_009288_020 Hb_004374_110 Hb_004374_110 Hb_006839_010--Hb_004374_110 Hb_006839_010--Hb_003040_050 Hb_005215_010 Hb_005215_010 Hb_006839_010--Hb_005215_010 Hb_006839_010--Hb_001377_100 Hb_009288_020--Hb_003040_050 Hb_006663_060 Hb_006663_060 Hb_009288_020--Hb_006663_060 Hb_073171_070 Hb_073171_070 Hb_009288_020--Hb_073171_070 Hb_011174_020 Hb_011174_020 Hb_009288_020--Hb_011174_020 Hb_000358_220 Hb_000358_220 Hb_000684_350--Hb_000358_220 Hb_000684_350--Hb_012055_110 Hb_000066_150 Hb_000066_150 Hb_000684_350--Hb_000066_150 Hb_000684_350--Hb_006839_010 Hb_000958_050 Hb_000958_050 Hb_000684_350--Hb_000958_050 Hb_009486_090 Hb_009486_090 Hb_001377_100--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001377_100--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_005186_040 Hb_005186_040 Hb_001377_100--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001377_100--Hb_012244_020 Hb_002007_110 Hb_002007_110 Hb_012055_110--Hb_002007_110 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_003040_050--Hb_073171_070 Hb_003040_050--Hb_006663_060 Hb_000317_100 Hb_000317_100 Hb_003040_050--Hb_000317_100 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.32706 16.9583 9.52067 13.4805 10.0389 9.13126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.71264 5.20181 7.55963 10.8917 21.3134

CAGE analysis