Hb_000059_270

Information

Type -
Description -
Location Contig59: 262866-267117
Sequence    

Annotation

kegg
ID rcu:RCOM_1502890
description superoxide dismutase [fe], putative (EC:1.15.1.1)
nr
ID NP_001295626.1
description superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
swissprot
ID Q9LU64
description Superoxide dismutase [Fe] 2, chloroplastic OS=Arabidopsis thaliana GN=FSD2 PE=1 SV=1
trembl
ID H8YHP4
description Superoxide dismutase OS=Jatropha curcas GN=FeSOD PE=2 SV=1
Gene Ontology
ID GO:0005739
description superoxide dismutase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50178: 262873-267888 , PASA_asmbl_50179: 262999-267846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_270 0.0 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
2 Hb_006198_130 0.0824857262 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
3 Hb_000816_200 0.0903424805 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
4 Hb_016461_030 0.0948831235 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_003171_030 0.0949316017 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
6 Hb_009687_020 0.0967598414 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
7 Hb_000345_370 0.0995385123 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
8 Hb_088500_010 0.1017418914 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
9 Hb_001723_030 0.1025563829 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
10 Hb_005276_010 0.1045469461 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
11 Hb_000309_020 0.1083899488 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
12 Hb_000144_060 0.1085814633 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002542_160 0.1094672676 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
14 Hb_001946_160 0.1118254821 - - putative chaperon P13.9 [Castanea sativa]
15 Hb_000112_060 0.1130475967 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
16 Hb_000164_140 0.1133092241 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_000976_190 0.1135471725 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
18 Hb_000480_040 0.1137714831 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
19 Hb_003777_020 0.1140476493 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
20 Hb_003029_020 0.1148675945 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000059_270 Hb_000059_270 Hb_006198_130 Hb_006198_130 Hb_000059_270--Hb_006198_130 Hb_000816_200 Hb_000816_200 Hb_000059_270--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_000059_270--Hb_016461_030 Hb_003171_030 Hb_003171_030 Hb_000059_270--Hb_003171_030 Hb_009687_020 Hb_009687_020 Hb_000059_270--Hb_009687_020 Hb_000345_370 Hb_000345_370 Hb_000059_270--Hb_000345_370 Hb_006198_130--Hb_003171_030 Hb_006198_130--Hb_009687_020 Hb_001269_500 Hb_001269_500 Hb_006198_130--Hb_001269_500 Hb_163950_070 Hb_163950_070 Hb_006198_130--Hb_163950_070 Hb_001220_050 Hb_001220_050 Hb_006198_130--Hb_001220_050 Hb_000816_200--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310 Hb_002282_070 Hb_002282_070 Hb_016461_030--Hb_002282_070 Hb_016461_030--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_016461_030--Hb_003777_020 Hb_002542_160 Hb_002542_160 Hb_016461_030--Hb_002542_160 Hb_001427_040 Hb_001427_040 Hb_016461_030--Hb_001427_040 Hb_003171_030--Hb_009687_020 Hb_003171_030--Hb_000816_200 Hb_001723_030 Hb_001723_030 Hb_003171_030--Hb_001723_030 Hb_003171_030--Hb_001269_500 Hb_158092_100 Hb_158092_100 Hb_009687_020--Hb_158092_100 Hb_004055_160 Hb_004055_160 Hb_009687_020--Hb_004055_160 Hb_009687_020--Hb_001269_500 Hb_000473_050 Hb_000473_050 Hb_009687_020--Hb_000473_050 Hb_000144_060 Hb_000144_060 Hb_000345_370--Hb_000144_060 Hb_000345_370--Hb_002282_070 Hb_000345_370--Hb_002542_160 Hb_000220_210 Hb_000220_210 Hb_000345_370--Hb_000220_210 Hb_000309_020 Hb_000309_020 Hb_000345_370--Hb_000309_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1725 5.63844 30.0419 18.4351 8.45443 7.29773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6499 13.949 6.28645 9.01882 59.3197

CAGE analysis