Hb_000059_290

Information

Type -
Description -
Location Contig59: 271576-272107
Sequence    

Annotation

kegg
ID rcu:RCOM_1502880
description pterin-4-alpha-carbinolamine dehydratase, putative
nr
ID XP_002511049.1
description pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RA24
description Pterin-4-alpha-carbinolamine dehydratase, putative OS=Ricinus communis GN=RCOM_1502880 PE=4 SV=1
Gene Ontology
ID GO:0006732
description pterin-4-alpha-carbinolamine dehydratase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50180: 272911-275233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_290 0.0 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
2 Hb_000203_030 0.0316175088 - - -
3 Hb_000408_010 0.0774133385 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
4 Hb_001998_190 0.0938985411 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
5 Hb_047923_010 0.1009341743 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
6 Hb_100873_040 0.1047050678 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
7 Hb_008111_020 0.1101645934 - - Receptor like protein 6, putative [Theobroma cacao]
8 Hb_000613_270 0.1262694359 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
9 Hb_023774_010 0.1309394314 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
10 Hb_000507_010 0.1414344226 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
11 Hb_002481_070 0.1431471688 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
12 Hb_000343_280 0.1457000263 - - hypothetical protein JCGZ_24094 [Jatropha curcas]
13 Hb_000933_120 0.1464928748 - - hypothetical protein L484_011925 [Morus notabilis]
14 Hb_001246_150 0.1482394342 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
15 Hb_019952_010 0.1516010569 - - -
16 Hb_003086_180 0.1523124442 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
17 Hb_003752_130 0.1533429628 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
18 Hb_048308_010 0.1555074723 - - Peroxidase superfamily protein [Theobroma cacao]
19 Hb_005211_110 0.1560494634 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
20 Hb_005306_040 0.1587229768 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000059_290 Hb_000059_290 Hb_000203_030 Hb_000203_030 Hb_000059_290--Hb_000203_030 Hb_000408_010 Hb_000408_010 Hb_000059_290--Hb_000408_010 Hb_001998_190 Hb_001998_190 Hb_000059_290--Hb_001998_190 Hb_047923_010 Hb_047923_010 Hb_000059_290--Hb_047923_010 Hb_100873_040 Hb_100873_040 Hb_000059_290--Hb_100873_040 Hb_008111_020 Hb_008111_020 Hb_000059_290--Hb_008111_020 Hb_000203_030--Hb_001998_190 Hb_000203_030--Hb_000408_010 Hb_000203_030--Hb_100873_040 Hb_001246_150 Hb_001246_150 Hb_000203_030--Hb_001246_150 Hb_000507_010 Hb_000507_010 Hb_000203_030--Hb_000507_010 Hb_000408_010--Hb_001998_190 Hb_002481_070 Hb_002481_070 Hb_000408_010--Hb_002481_070 Hb_000408_010--Hb_000507_010 Hb_019952_010 Hb_019952_010 Hb_000408_010--Hb_019952_010 Hb_001998_190--Hb_000507_010 Hb_000933_120 Hb_000933_120 Hb_001998_190--Hb_000933_120 Hb_001998_190--Hb_019952_010 Hb_000613_270 Hb_000613_270 Hb_047923_010--Hb_000613_270 Hb_023774_010 Hb_023774_010 Hb_047923_010--Hb_023774_010 Hb_001652_050 Hb_001652_050 Hb_047923_010--Hb_001652_050 Hb_003086_180 Hb_003086_180 Hb_047923_010--Hb_003086_180 Hb_047923_010--Hb_008111_020 Hb_002157_180 Hb_002157_180 Hb_047923_010--Hb_002157_180 Hb_100873_040--Hb_000408_010 Hb_100873_040--Hb_001998_190 Hb_000343_280 Hb_000343_280 Hb_100873_040--Hb_000343_280 Hb_005306_040 Hb_005306_040 Hb_100873_040--Hb_005306_040 Hb_008111_020--Hb_002157_180 Hb_003752_130 Hb_003752_130 Hb_008111_020--Hb_003752_130 Hb_008111_020--Hb_001652_050 Hb_008111_020--Hb_000613_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.491856 0.406806 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.446061 0

CAGE analysis