Hb_000059_330

Information

Type -
Description -
Location Contig59: 299454-303028
Sequence    

Annotation

kegg
ID tcc:TCM_014807
description RNA-binding family protein
nr
ID XP_012090531.1
description PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
swissprot
ID Q9FJN9
description Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1
trembl
ID A0A067JR63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26326 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50182: 299726-302690 , PASA_asmbl_50183: 302835-303102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_330 0.0 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
2 Hb_096563_010 0.0563430112 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
3 Hb_001259_090 0.0644462254 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
4 Hb_003428_030 0.0645824025 - - tRNA, putative [Ricinus communis]
5 Hb_003092_040 0.067681851 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
6 Hb_024071_020 0.0681728899 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
7 Hb_004310_130 0.0697486235 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
8 Hb_007691_030 0.0699543774 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
9 Hb_025645_010 0.0700760784 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
10 Hb_000038_170 0.0701375801 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
11 Hb_028995_040 0.0702076704 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
12 Hb_000661_250 0.0707636468 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
13 Hb_001635_170 0.0715340437 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
14 Hb_020956_020 0.0734356681 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
15 Hb_001552_020 0.0734923912 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
16 Hb_000656_400 0.0739049364 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
17 Hb_017224_030 0.0746336071 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
18 Hb_000210_180 0.0762257095 - - PREDICTED: protein YLS9-like [Jatropha curcas]
19 Hb_000510_130 0.0765459212 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
20 Hb_000403_050 0.0773468392 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000059_330 Hb_000059_330 Hb_096563_010 Hb_096563_010 Hb_000059_330--Hb_096563_010 Hb_001259_090 Hb_001259_090 Hb_000059_330--Hb_001259_090 Hb_003428_030 Hb_003428_030 Hb_000059_330--Hb_003428_030 Hb_003092_040 Hb_003092_040 Hb_000059_330--Hb_003092_040 Hb_024071_020 Hb_024071_020 Hb_000059_330--Hb_024071_020 Hb_004310_130 Hb_004310_130 Hb_000059_330--Hb_004310_130 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_096563_010--Hb_001259_090 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_001259_090--Hb_000661_250 Hb_000866_270 Hb_000866_270 Hb_001259_090--Hb_000866_270 Hb_002007_060 Hb_002007_060 Hb_001259_090--Hb_002007_060 Hb_000656_400 Hb_000656_400 Hb_001259_090--Hb_000656_400 Hb_007691_030 Hb_007691_030 Hb_003428_030--Hb_007691_030 Hb_003525_010 Hb_003525_010 Hb_003428_030--Hb_003525_010 Hb_000093_160 Hb_000093_160 Hb_003428_030--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_000032_270 Hb_000032_270 Hb_003428_030--Hb_000032_270 Hb_007416_280 Hb_007416_280 Hb_003092_040--Hb_007416_280 Hb_005663_060 Hb_005663_060 Hb_003092_040--Hb_005663_060 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_003092_040--Hb_007691_030 Hb_032202_190 Hb_032202_190 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050 Hb_001140_370 Hb_001140_370 Hb_024071_020--Hb_001140_370 Hb_000610_050 Hb_000610_050 Hb_024071_020--Hb_000610_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_024071_020--Hb_003428_030 Hb_007218_080 Hb_007218_080 Hb_004310_130--Hb_007218_080 Hb_150360_030 Hb_150360_030 Hb_004310_130--Hb_150360_030 Hb_001369_180 Hb_001369_180 Hb_004310_130--Hb_001369_180 Hb_000086_380 Hb_000086_380 Hb_004310_130--Hb_000086_380 Hb_001635_170 Hb_001635_170 Hb_004310_130--Hb_001635_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.0246 14.9534 13.4271 14.8049 19.1907 22.0974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0337 28.1355 16.711 12.5022 10.1352

CAGE analysis