Hb_000060_040

Information

Type -
Description -
Location Contig60: 50387-50878
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06130g
description hypothetical protein
nr
ID KDP21149.1
description hypothetical protein JCGZ_21620 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000060_040 0.0 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
2 Hb_004310_020 0.0815945334 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
3 Hb_000780_060 0.0834921237 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
4 Hb_010712_030 0.0879317337 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000796_210 0.0926136104 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001358_030 0.1041155297 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
7 Hb_000343_160 0.1048686643 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
8 Hb_000008_330 0.1052792104 - - 60S ribosomal protein L12A [Hevea brasiliensis]
9 Hb_009775_020 0.1072491158 - - PREDICTED: vesicle transport protein GOT1B-like [Jatropha curcas]
10 Hb_000640_240 0.1080822859 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
11 Hb_105386_010 0.1085306077 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
12 Hb_005333_070 0.1086317567 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003498_090 0.1091726354 - - hypothetical protein RCOM_0867850 [Ricinus communis]
14 Hb_007590_010 0.1106648314 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_011970_030 0.1107467754 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
16 Hb_112798_020 0.1107856451 - - dnajc14 protein, putative [Ricinus communis]
17 Hb_000109_160 0.111942622 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
18 Hb_001287_080 0.1131916515 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000670_050 0.113551301 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
20 Hb_001430_120 0.1145639408 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000060_040 Hb_000060_040 Hb_004310_020 Hb_004310_020 Hb_000060_040--Hb_004310_020 Hb_000780_060 Hb_000780_060 Hb_000060_040--Hb_000780_060 Hb_010712_030 Hb_010712_030 Hb_000060_040--Hb_010712_030 Hb_000796_210 Hb_000796_210 Hb_000060_040--Hb_000796_210 Hb_001358_030 Hb_001358_030 Hb_000060_040--Hb_001358_030 Hb_000343_160 Hb_000343_160 Hb_000060_040--Hb_000343_160 Hb_004310_020--Hb_010712_030 Hb_000205_300 Hb_000205_300 Hb_004310_020--Hb_000205_300 Hb_158062_010 Hb_158062_010 Hb_004310_020--Hb_158062_010 Hb_001135_130 Hb_001135_130 Hb_004310_020--Hb_001135_130 Hb_001051_080 Hb_001051_080 Hb_004310_020--Hb_001051_080 Hb_003549_150 Hb_003549_150 Hb_004310_020--Hb_003549_150 Hb_000349_060 Hb_000349_060 Hb_000780_060--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000780_060--Hb_002983_010 Hb_000780_060--Hb_001358_030 Hb_001301_160 Hb_001301_160 Hb_000780_060--Hb_001301_160 Hb_003038_030 Hb_003038_030 Hb_000780_060--Hb_003038_030 Hb_000099_080 Hb_000099_080 Hb_010712_030--Hb_000099_080 Hb_000125_130 Hb_000125_130 Hb_010712_030--Hb_000125_130 Hb_000152_380 Hb_000152_380 Hb_010712_030--Hb_000152_380 Hb_001408_040 Hb_001408_040 Hb_010712_030--Hb_001408_040 Hb_007059_010 Hb_007059_010 Hb_010712_030--Hb_007059_010 Hb_003428_030 Hb_003428_030 Hb_000796_210--Hb_003428_030 Hb_112798_020 Hb_112798_020 Hb_000796_210--Hb_112798_020 Hb_000032_270 Hb_000032_270 Hb_000796_210--Hb_000032_270 Hb_000610_050 Hb_000610_050 Hb_000796_210--Hb_000610_050 Hb_007576_080 Hb_007576_080 Hb_000796_210--Hb_007576_080 Hb_002245_030 Hb_002245_030 Hb_000796_210--Hb_002245_030 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_105386_010 Hb_105386_010 Hb_001358_030--Hb_105386_010 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_000189_340 Hb_000189_340 Hb_001358_030--Hb_000189_340 Hb_005333_070 Hb_005333_070 Hb_000343_160--Hb_005333_070 Hb_000343_160--Hb_000125_130 Hb_007590_010 Hb_007590_010 Hb_000343_160--Hb_007590_010 Hb_004767_100 Hb_004767_100 Hb_000343_160--Hb_004767_100 Hb_000343_160--Hb_000780_060 Hb_005686_060 Hb_005686_060 Hb_000343_160--Hb_005686_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6443 10.7031 6.46833 12.7143 14.738 14.4662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4754 16.8918 8.40986 5.41 1.81521

CAGE analysis