Hb_000060_050

Information

Type -
Description -
Location Contig60: 53725-56136
Sequence    

Annotation

kegg
ID rcu:RCOM_1252050
description zinc ion binding protein, putative
nr
ID XP_012091845.1
description PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
swissprot
ID Q9URW6
description SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1
trembl
ID A0A067JEF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21619 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50542: 53703-53788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000060_050 0.0 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
2 Hb_003305_040 0.0601509201 - - AP47/50p mRNA family protein [Populus trichocarpa]
3 Hb_001489_110 0.0679111743 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
4 Hb_002660_170 0.0705743526 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
5 Hb_000212_450 0.0740678548 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
6 Hb_000252_100 0.0760272907 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
7 Hb_000173_410 0.0796290514 - - PREDICTED: BI1-like protein [Jatropha curcas]
8 Hb_003529_030 0.0798271773 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
9 Hb_000025_190 0.0807902292 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
10 Hb_001307_030 0.0857177174 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
11 Hb_185255_010 0.0874354063 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
12 Hb_025098_010 0.0896568212 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_002110_100 0.0907206401 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
14 Hb_000454_090 0.0914028322 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
15 Hb_000402_130 0.0918611476 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
16 Hb_000297_120 0.0926337295 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
17 Hb_010997_090 0.0942366177 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
18 Hb_007416_090 0.0963703325 - - UDP-sugar transporter, putative [Ricinus communis]
19 Hb_000136_100 0.0964588098 - - PREDICTED: syntaxin-61 [Jatropha curcas]
20 Hb_007386_040 0.0968068926 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000060_050 Hb_000060_050 Hb_003305_040 Hb_003305_040 Hb_000060_050--Hb_003305_040 Hb_001489_110 Hb_001489_110 Hb_000060_050--Hb_001489_110 Hb_002660_170 Hb_002660_170 Hb_000060_050--Hb_002660_170 Hb_000212_450 Hb_000212_450 Hb_000060_050--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000060_050--Hb_000252_100 Hb_000173_410 Hb_000173_410 Hb_000060_050--Hb_000173_410 Hb_003305_040--Hb_000252_100 Hb_002110_100 Hb_002110_100 Hb_003305_040--Hb_002110_100 Hb_000454_090 Hb_000454_090 Hb_003305_040--Hb_000454_090 Hb_003305_040--Hb_000173_410 Hb_005601_040 Hb_005601_040 Hb_003305_040--Hb_005601_040 Hb_001353_010 Hb_001353_010 Hb_001489_110--Hb_001353_010 Hb_002995_050 Hb_002995_050 Hb_001489_110--Hb_002995_050 Hb_185255_010 Hb_185255_010 Hb_001489_110--Hb_185255_010 Hb_001269_190 Hb_001269_190 Hb_001489_110--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_001489_110--Hb_025098_010 Hb_000025_190 Hb_000025_190 Hb_002660_170--Hb_000025_190 Hb_007218_120 Hb_007218_120 Hb_002660_170--Hb_007218_120 Hb_006059_010 Hb_006059_010 Hb_002660_170--Hb_006059_010 Hb_000012_310 Hb_000012_310 Hb_002660_170--Hb_000012_310 Hb_002477_290 Hb_002477_290 Hb_002660_170--Hb_002477_290 Hb_000521_130 Hb_000521_130 Hb_000212_450--Hb_000521_130 Hb_007416_090 Hb_007416_090 Hb_000212_450--Hb_007416_090 Hb_000140_380 Hb_000140_380 Hb_000212_450--Hb_000140_380 Hb_000212_450--Hb_000173_410 Hb_000212_450--Hb_000252_100 Hb_000252_100--Hb_000454_090 Hb_000252_100--Hb_000173_410 Hb_000252_100--Hb_000140_380 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_000173_410--Hb_000454_090 Hb_000220_100 Hb_000220_100 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_005765_050 Hb_005765_050 Hb_000173_410--Hb_005765_050 Hb_004078_040 Hb_004078_040 Hb_000173_410--Hb_004078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.69156 5.65879 7.33695 21.4117 3.87059 7.22551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.06817 12.4512 13.3522 10.357 11.1057

CAGE analysis