Hb_000060_060

Information

Type transcription factor
Description TF Family: C2H2
Location Contig60: 58162-58819
Sequence    

Annotation

kegg
ID cam:101490856
description genome polyprotein-like
nr
ID KDP25992.1
description hypothetical protein JCGZ_22940 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQ28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22940 PE=4 SV=1
Gene Ontology
ID GO:0003824
description polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000060_060 0.0 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22940 [Jatropha curcas]
2 Hb_000614_270 0.1854893622 - - -
3 Hb_002599_040 0.1974836623 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
4 Hb_104735_010 0.2151745835 - - cytochrome c biogenesis C (mitochondrion) [Hevea brasiliensis]
5 Hb_143004_010 0.2223419468 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
6 Hb_003739_040 0.2300238352 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
7 Hb_006474_010 0.231303526 - - hypothetical protein VITISV_032357 [Vitis vinifera]
8 Hb_003567_020 0.236216658 - - conserved hypothetical protein [Ricinus communis]
9 Hb_180367_010 0.2381710046 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
10 Hb_021374_020 0.2401053772 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
11 Hb_154997_010 0.2423583409 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
12 Hb_002495_050 0.2440443608 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
13 Hb_001124_170 0.2448057995 - - putative retrotransposon protein [Phyllostachys edulis]
14 Hb_001450_010 0.2477567958 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
15 Hb_001158_010 0.2491061691 - - hypothetical protein, partial [Pseudomonas fluorescens]
16 Hb_003746_020 0.2518655644 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Gossypium raimondii]
17 Hb_062192_060 0.2527426296 - - maturase (mitochondrion) [Hevea brasiliensis]
18 Hb_000710_160 0.2563281802 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
19 Hb_028527_010 0.2569458271 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_000307_230 0.26373794 - - -

Gene co-expression network

sample Hb_000060_060 Hb_000060_060 Hb_000614_270 Hb_000614_270 Hb_000060_060--Hb_000614_270 Hb_002599_040 Hb_002599_040 Hb_000060_060--Hb_002599_040 Hb_104735_010 Hb_104735_010 Hb_000060_060--Hb_104735_010 Hb_143004_010 Hb_143004_010 Hb_000060_060--Hb_143004_010 Hb_003739_040 Hb_003739_040 Hb_000060_060--Hb_003739_040 Hb_006474_010 Hb_006474_010 Hb_000060_060--Hb_006474_010 Hb_003746_020 Hb_003746_020 Hb_000614_270--Hb_003746_020 Hb_000614_270--Hb_104735_010 Hb_002482_050 Hb_002482_050 Hb_000614_270--Hb_002482_050 Hb_000614_270--Hb_143004_010 Hb_062192_060 Hb_062192_060 Hb_000614_270--Hb_062192_060 Hb_000307_230 Hb_000307_230 Hb_002599_040--Hb_000307_230 Hb_008730_010 Hb_008730_010 Hb_002599_040--Hb_008730_010 Hb_106815_010 Hb_106815_010 Hb_002599_040--Hb_106815_010 Hb_008326_010 Hb_008326_010 Hb_002599_040--Hb_008326_010 Hb_002599_040--Hb_000614_270 Hb_041813_030 Hb_041813_030 Hb_104735_010--Hb_041813_030 Hb_021374_020 Hb_021374_020 Hb_104735_010--Hb_021374_020 Hb_159305_020 Hb_159305_020 Hb_104735_010--Hb_159305_020 Hb_012163_050 Hb_012163_050 Hb_104735_010--Hb_012163_050 Hb_097433_030 Hb_097433_030 Hb_104735_010--Hb_097433_030 Hb_042463_070 Hb_042463_070 Hb_104735_010--Hb_042463_070 Hb_143004_010--Hb_021374_020 Hb_000789_210 Hb_000789_210 Hb_143004_010--Hb_000789_210 Hb_000668_030 Hb_000668_030 Hb_143004_010--Hb_000668_030 Hb_001115_060 Hb_001115_060 Hb_143004_010--Hb_001115_060 Hb_004984_090 Hb_004984_090 Hb_143004_010--Hb_004984_090 Hb_002281_060 Hb_002281_060 Hb_143004_010--Hb_002281_060 Hb_180367_010 Hb_180367_010 Hb_003739_040--Hb_180367_010 Hb_003567_020 Hb_003567_020 Hb_003739_040--Hb_003567_020 Hb_006599_040 Hb_006599_040 Hb_003739_040--Hb_006599_040 Hb_004145_030 Hb_004145_030 Hb_003739_040--Hb_004145_030 Hb_174010_030 Hb_174010_030 Hb_003739_040--Hb_174010_030 Hb_000777_010 Hb_000777_010 Hb_003739_040--Hb_000777_010 Hb_006474_010--Hb_003567_020 Hb_121041_010 Hb_121041_010 Hb_006474_010--Hb_121041_010 Hb_006474_010--Hb_180367_010 Hb_006474_010--Hb_003739_040 Hb_006474_010--Hb_042463_070 Hb_158203_010 Hb_158203_010 Hb_006474_010--Hb_158203_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0875026 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0703033 0.124374 0.143501 1.5153

CAGE analysis