Hb_000060_130

Information

Type -
Description -
Location Contig60: 150318-153242
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000060_130 0.0 - - -
2 Hb_007543_020 0.1161879293 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
3 Hb_005092_090 0.118674151 - - cold regulated protein [Manihot esculenta]
4 Hb_116784_020 0.1336970062 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
5 Hb_003302_010 0.1402839909 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
6 Hb_004899_210 0.1429161127 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
7 Hb_001366_260 0.1479924233 - - T4.15 [Malus x robusta]
8 Hb_000027_230 0.1496002567 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_000959_050 0.1506768628 - - PREDICTED: uncharacterized protein LOC102627366 [Citrus sinensis]
10 Hb_000820_100 0.1511374532 - - RNA-directed DNA polymerase [Arachis hypogaea]
11 Hb_142522_040 0.1524810763 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_012796_030 0.152884741 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
13 Hb_009434_060 0.1567359996 - - T4.15 [Malus x robusta]
14 Hb_001345_040 0.1603535914 - - hypothetical protein VITISV_015004 [Vitis vinifera]
15 Hb_006588_020 0.165258568 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_000352_060 0.1655146145 - - RNA-directed DNA polymerase [Arachis hypogaea]
17 Hb_000173_110 0.1659241651 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
18 Hb_000289_090 0.1676466509 - - -
19 Hb_144027_010 0.168518769 - - -
20 Hb_023738_010 0.1688006236 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]

Gene co-expression network

sample Hb_000060_130 Hb_000060_130 Hb_007543_020 Hb_007543_020 Hb_000060_130--Hb_007543_020 Hb_005092_090 Hb_005092_090 Hb_000060_130--Hb_005092_090 Hb_116784_020 Hb_116784_020 Hb_000060_130--Hb_116784_020 Hb_003302_010 Hb_003302_010 Hb_000060_130--Hb_003302_010 Hb_004899_210 Hb_004899_210 Hb_000060_130--Hb_004899_210 Hb_001366_260 Hb_001366_260 Hb_000060_130--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_007543_020--Hb_000820_100 Hb_007543_020--Hb_001366_260 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000123_340 Hb_000123_340 Hb_007543_020--Hb_000123_340 Hb_006588_020 Hb_006588_020 Hb_005092_090--Hb_006588_020 Hb_000574_340 Hb_000574_340 Hb_005092_090--Hb_000574_340 Hb_001345_040 Hb_001345_040 Hb_005092_090--Hb_001345_040 Hb_005092_090--Hb_116784_020 Hb_005092_090--Hb_001366_260 Hb_012796_030 Hb_012796_030 Hb_005092_090--Hb_012796_030 Hb_067472_010 Hb_067472_010 Hb_116784_020--Hb_067472_010 Hb_116784_020--Hb_001366_260 Hb_000352_060 Hb_000352_060 Hb_116784_020--Hb_000352_060 Hb_001468_040 Hb_001468_040 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_116784_020--Hb_000820_100 Hb_023738_010 Hb_023738_010 Hb_003302_010--Hb_023738_010 Hb_080033_020 Hb_080033_020 Hb_003302_010--Hb_080033_020 Hb_144045_010 Hb_144045_010 Hb_003302_010--Hb_144045_010 Hb_000512_050 Hb_000512_050 Hb_003302_010--Hb_000512_050 Hb_003302_010--Hb_005092_090 Hb_003900_040 Hb_003900_040 Hb_004899_210--Hb_003900_040 Hb_144027_010 Hb_144027_010 Hb_004899_210--Hb_144027_010 Hb_007575_020 Hb_007575_020 Hb_004899_210--Hb_007575_020 Hb_001250_030 Hb_001250_030 Hb_004899_210--Hb_001250_030 Hb_008642_050 Hb_008642_050 Hb_004899_210--Hb_008642_050 Hb_017640_010 Hb_017640_010 Hb_004899_210--Hb_017640_010 Hb_001366_260--Hb_000820_100 Hb_001366_260--Hb_067472_010 Hb_000173_110 Hb_000173_110 Hb_001366_260--Hb_000173_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.426002 0.181546 0.0508774 0.0270699 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.168955 1.15404

CAGE analysis