Hb_000061_010

Information

Type -
Description -
Location Contig61: 9533-10777
Sequence    

Annotation

kegg
ID rcu:RCOM_1471560
description hypothetical protein
nr
ID XP_002514738.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8RXS1
description Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana GN=PNSB4 PE=2 SV=1
trembl
ID B9RLW9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1471560 PE=4 SV=1
Gene Ontology
ID GO:0009535
description photosynthetic ndh subunit of subcomplex b chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50899: 9369-10764
cDNA
(Sanger)
(ID:Location)		 003_J13.ab1: 9439-10688 , 008_J19.ab1: 9462-10707 , 013_H17.ab1: 9439-10688 , 023_K20.ab1: 9454-10633 , 027_P07.ab1: 9453-10707 , 033_D05.ab1: 9459-10640 , 035_F21.ab1: 9446-10707 , 037_C10.ab1: 9459-10633 , 052_J23.ab1: 9447-10714 , 053_M15.ab1: 9470-10707

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002818_110 0.0388045043 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
3 Hb_001675_090 0.0496244883 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
4 Hb_000210_030 0.0550770392 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
5 Hb_006573_110 0.0554337722 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
6 Hb_000018_110 0.0560769253 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
7 Hb_000262_090 0.0568088289 - - Root phototropism protein, putative [Ricinus communis]
8 Hb_008013_020 0.0575840683 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
9 Hb_001135_310 0.0599918768 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
10 Hb_003836_040 0.0619058544 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
11 Hb_003605_170 0.0620514235 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
12 Hb_000719_030 0.0622692714 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
13 Hb_005280_020 0.0643313595 - - glycine cleavage system h protein, putative [Ricinus communis]
14 Hb_002284_290 0.0656602117 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
15 Hb_000834_160 0.0665449877 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
16 Hb_000174_120 0.0681234429 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
17 Hb_000821_030 0.0688908633 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
18 Hb_000297_190 0.0701216142 - - cell wall invertase [Manihot esculenta]
19 Hb_003598_070 0.0702756324 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000915_210 0.0717912591 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000061_010 Hb_000061_010 Hb_002818_110 Hb_002818_110 Hb_000061_010--Hb_002818_110 Hb_001675_090 Hb_001675_090 Hb_000061_010--Hb_001675_090 Hb_000210_030 Hb_000210_030 Hb_000061_010--Hb_000210_030 Hb_006573_110 Hb_006573_110 Hb_000061_010--Hb_006573_110 Hb_000018_110 Hb_000018_110 Hb_000061_010--Hb_000018_110 Hb_000262_090 Hb_000262_090 Hb_000061_010--Hb_000262_090 Hb_002818_110--Hb_000210_030 Hb_002818_110--Hb_006573_110 Hb_002818_110--Hb_001675_090 Hb_008013_020 Hb_008013_020 Hb_002818_110--Hb_008013_020 Hb_000719_030 Hb_000719_030 Hb_002818_110--Hb_000719_030 Hb_001675_090--Hb_000719_030 Hb_005345_020 Hb_005345_020 Hb_001675_090--Hb_005345_020 Hb_001675_090--Hb_000210_030 Hb_009476_030 Hb_009476_030 Hb_001675_090--Hb_009476_030 Hb_000210_030--Hb_000262_090 Hb_003573_030 Hb_003573_030 Hb_000210_030--Hb_003573_030 Hb_000821_030 Hb_000821_030 Hb_000210_030--Hb_000821_030 Hb_000210_030--Hb_006573_110 Hb_006573_110--Hb_008013_020 Hb_003921_020 Hb_003921_020 Hb_006573_110--Hb_003921_020 Hb_006573_110--Hb_000262_090 Hb_006573_110--Hb_000821_030 Hb_145502_010 Hb_145502_010 Hb_000018_110--Hb_145502_010 Hb_147976_010 Hb_147976_010 Hb_000018_110--Hb_147976_010 Hb_001205_140 Hb_001205_140 Hb_000018_110--Hb_001205_140 Hb_000142_050 Hb_000142_050 Hb_000018_110--Hb_000142_050 Hb_002245_050 Hb_002245_050 Hb_000018_110--Hb_002245_050 Hb_003598_070 Hb_003598_070 Hb_000018_110--Hb_003598_070 Hb_000262_090--Hb_000821_030 Hb_000262_090--Hb_008013_020 Hb_000262_090--Hb_000018_110 Hb_000262_090--Hb_002818_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109739 5.16047 398.341 104.011 0 0.0895025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16493 0.366338 0.109304 0.0744328 369.5

CAGE analysis