Hb_000061_030

Information

Type -
Description -
Location Contig61: 15855-17408
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04990g
description POPTRDRAFT_575042; hypothetical protein
nr
ID XP_012080291.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
swissprot
ID A8MQA3
description Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
trembl
ID A0A067K594
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11648 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at4g21065-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 003_G16.ab1: 16647-17395

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
2 Hb_002329_020 0.0425085831 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
3 Hb_002783_040 0.0651089872 transcription factor TF Family: IWS1 -
4 Hb_002267_140 0.0679221908 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
5 Hb_002263_040 0.0750258634 - - carbon catabolite repressor protein, putative [Ricinus communis]
6 Hb_006275_020 0.0755762627 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
7 Hb_002843_120 0.0762572197 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
8 Hb_000172_430 0.0796688005 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000015_170 0.0802154181 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000866_460 0.0808172187 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
11 Hb_000861_080 0.082769235 - - PREDICTED: protein ELC-like [Jatropha curcas]
12 Hb_003929_280 0.0830339382 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
13 Hb_060094_020 0.0843854001 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
14 Hb_001247_250 0.0844785228 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
15 Hb_001322_130 0.0845201264 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
16 Hb_012194_030 0.0854247599 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
17 Hb_000803_070 0.0858706111 - - PREDICTED: protein TRAUCO [Jatropha curcas]
18 Hb_000120_130 0.0858865455 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
19 Hb_030827_020 0.0879449155 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
20 Hb_001279_120 0.088131186 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000061_030 Hb_000061_030 Hb_002329_020 Hb_002329_020 Hb_000061_030--Hb_002329_020 Hb_002783_040 Hb_002783_040 Hb_000061_030--Hb_002783_040 Hb_002267_140 Hb_002267_140 Hb_000061_030--Hb_002267_140 Hb_002263_040 Hb_002263_040 Hb_000061_030--Hb_002263_040 Hb_006275_020 Hb_006275_020 Hb_000061_030--Hb_006275_020 Hb_002843_120 Hb_002843_120 Hb_000061_030--Hb_002843_120 Hb_001279_120 Hb_001279_120 Hb_002329_020--Hb_001279_120 Hb_002329_020--Hb_002267_140 Hb_002085_030 Hb_002085_030 Hb_002329_020--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_002329_020--Hb_012194_030 Hb_001754_030 Hb_001754_030 Hb_002329_020--Hb_001754_030 Hb_002234_170 Hb_002234_170 Hb_002783_040--Hb_002234_170 Hb_002798_070 Hb_002798_070 Hb_002783_040--Hb_002798_070 Hb_002253_080 Hb_002253_080 Hb_002783_040--Hb_002253_080 Hb_009150_020 Hb_009150_020 Hb_002783_040--Hb_009150_020 Hb_001322_130 Hb_001322_130 Hb_002783_040--Hb_001322_130 Hb_008253_030 Hb_008253_030 Hb_002267_140--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002267_140--Hb_001767_140 Hb_138596_010 Hb_138596_010 Hb_002267_140--Hb_138596_010 Hb_002276_240 Hb_002276_240 Hb_002267_140--Hb_002276_240 Hb_002267_140--Hb_002253_080 Hb_002267_140--Hb_002843_120 Hb_000442_010 Hb_000442_010 Hb_002263_040--Hb_000442_010 Hb_002263_040--Hb_002798_070 Hb_002636_100 Hb_002636_100 Hb_002263_040--Hb_002636_100 Hb_002263_040--Hb_002783_040 Hb_000977_120 Hb_000977_120 Hb_002263_040--Hb_000977_120 Hb_000120_130 Hb_000120_130 Hb_006275_020--Hb_000120_130 Hb_001500_060 Hb_001500_060 Hb_006275_020--Hb_001500_060 Hb_000015_170 Hb_000015_170 Hb_006275_020--Hb_000015_170 Hb_000103_340 Hb_000103_340 Hb_006275_020--Hb_000103_340 Hb_001761_120 Hb_001761_120 Hb_006275_020--Hb_001761_120 Hb_000603_280 Hb_000603_280 Hb_002843_120--Hb_000603_280 Hb_002843_120--Hb_138596_010 Hb_000077_140 Hb_000077_140 Hb_002843_120--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_002843_120--Hb_003504_030 Hb_013399_100 Hb_013399_100 Hb_002843_120--Hb_013399_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.59719 7.12896 5.49579 3.15129 3.8186 4.63412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.57882 3.3028 5.19273 2.47543 5.14031

CAGE analysis