Hb_000061_090

Information

Type -
Description -
Location Contig61: 81969-85682
Sequence    

Annotation

kegg
ID -
description -
nr
ID KJB17347.1
description hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2MH16
description Gossypium raimondii chromosome 3, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_003G0981001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_090 0.0 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
2 Hb_000414_110 0.1749405044 - - PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
3 Hb_000879_190 0.1872076569 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007423_020 0.1879389204 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
5 Hb_000011_290 0.190434004 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
6 Hb_003947_040 0.1941459102 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
7 Hb_002539_020 0.2000767104 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
8 Hb_007199_010 0.2017811015 - - PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera]
9 Hb_006846_120 0.2040885113 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
10 Hb_074506_010 0.2099317625 - - JHL25H03.10 [Jatropha curcas]
11 Hb_000165_210 0.2136931981 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
12 Hb_029904_010 0.2138872091 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
13 Hb_017170_030 0.2143758463 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
14 Hb_000808_170 0.2220862002 - - protein disulfide isomerase, putative [Ricinus communis]
15 Hb_004079_080 0.2231702257 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
16 Hb_000203_140 0.223753588 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
17 Hb_002291_010 0.2246703323 - - ring finger protein, putative [Ricinus communis]
18 Hb_000828_050 0.226723708 - - unnamed protein product [Vitis vinifera]
19 Hb_000675_060 0.2272408852 - - cytochrome P450, putative [Ricinus communis]
20 Hb_138710_010 0.2301625691 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]

Gene co-expression network

sample Hb_000061_090 Hb_000061_090 Hb_000414_110 Hb_000414_110 Hb_000061_090--Hb_000414_110 Hb_000879_190 Hb_000879_190 Hb_000061_090--Hb_000879_190 Hb_007423_020 Hb_007423_020 Hb_000061_090--Hb_007423_020 Hb_000011_290 Hb_000011_290 Hb_000061_090--Hb_000011_290 Hb_003947_040 Hb_003947_040 Hb_000061_090--Hb_003947_040 Hb_002539_020 Hb_002539_020 Hb_000061_090--Hb_002539_020 Hb_000417_320 Hb_000417_320 Hb_000414_110--Hb_000417_320 Hb_028811_010 Hb_028811_010 Hb_000414_110--Hb_028811_010 Hb_000165_210 Hb_000165_210 Hb_000414_110--Hb_000165_210 Hb_000808_170 Hb_000808_170 Hb_000414_110--Hb_000808_170 Hb_002291_010 Hb_002291_010 Hb_000414_110--Hb_002291_010 Hb_000879_190--Hb_000165_210 Hb_000879_190--Hb_000414_110 Hb_004800_170 Hb_004800_170 Hb_000879_190--Hb_004800_170 Hb_158092_060 Hb_158092_060 Hb_000879_190--Hb_158092_060 Hb_001699_200 Hb_001699_200 Hb_000879_190--Hb_001699_200 Hb_007423_020--Hb_002539_020 Hb_007423_020--Hb_000808_170 Hb_006846_120 Hb_006846_120 Hb_007423_020--Hb_006846_120 Hb_000625_030 Hb_000625_030 Hb_007423_020--Hb_000625_030 Hb_000181_020 Hb_000181_020 Hb_007423_020--Hb_000181_020 Hb_002539_010 Hb_002539_010 Hb_007423_020--Hb_002539_010 Hb_000011_290--Hb_001699_200 Hb_007943_160 Hb_007943_160 Hb_000011_290--Hb_007943_160 Hb_004079_080 Hb_004079_080 Hb_000011_290--Hb_004079_080 Hb_001971_060 Hb_001971_060 Hb_000011_290--Hb_001971_060 Hb_000011_290--Hb_002539_020 Hb_000172_190 Hb_000172_190 Hb_003947_040--Hb_000172_190 Hb_003947_040--Hb_000879_190 Hb_000675_060 Hb_000675_060 Hb_003947_040--Hb_000675_060 Hb_000828_050 Hb_000828_050 Hb_003947_040--Hb_000828_050 Hb_003947_040--Hb_001699_200 Hb_002539_020--Hb_002539_010 Hb_002539_020--Hb_006846_120 Hb_008226_070 Hb_008226_070 Hb_002539_020--Hb_008226_070 Hb_100147_010 Hb_100147_010 Hb_002539_020--Hb_100147_010 Hb_000094_370 Hb_000094_370 Hb_002539_020--Hb_000094_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0926852 0.357971 0.315736 0.302468 0.0562013 0.0971323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.625351 1.08916 0.585701 3.34088 0.940823

CAGE analysis