Hb_000061_130

Information

Type -
Description -
Location Contig61: 122652-125094
Sequence    

Annotation

kegg
ID rcu:RCOM_1471300
description rotamase, putative (EC:5.2.1.8)
nr
ID XP_002514732.1
description rotamase, putative [Ricinus communis]
swissprot
ID A6QPY8
description Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Bos taurus GN=PIN4 PE=2 SV=1
trembl
ID B9RLW3
description Rotamase, putative OS=Ricinus communis GN=RCOM_1471300 PE=4 SV=1
Gene Ontology
ID GO:0016853
description peptidyl-prolyl cis-trans isomerase nima-interacting 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50909: 122258-125025 , PASA_asmbl_50910: 122580-125090
cDNA
(Sanger)
(ID:Location)		 031_E20.ab1: 122258-125022 , 040_H03.ab1: 124438-124917

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_130 0.0 - - rotamase, putative [Ricinus communis]
2 Hb_027380_180 0.0688218308 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
3 Hb_001085_270 0.0719506641 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
4 Hb_000193_120 0.0934579722 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
5 Hb_001240_020 0.0968187519 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
6 Hb_000567_410 0.1011495716 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
7 Hb_002909_130 0.1019370818 - - Uncharacterized protein isoform 1 [Theobroma cacao]
8 Hb_026048_070 0.1032149287 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
9 Hb_000062_390 0.1058385817 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
10 Hb_000881_080 0.1085618699 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005000_180 0.1109150516 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
12 Hb_000905_180 0.1115862194 - - 60S ribosomal protein L31A [Hevea brasiliensis]
13 Hb_001369_170 0.1122351474 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
14 Hb_000083_090 0.1125513943 - - immunophilin, putative [Ricinus communis]
15 Hb_000302_290 0.1134834507 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
16 Hb_001016_090 0.1136519528 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
17 Hb_172221_010 0.1146420105 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
18 Hb_001634_040 0.1153560009 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
19 Hb_001076_020 0.1167118369 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
20 Hb_086639_090 0.1174423377 - - 60S ribosomal protein L7a, putative [Ricinus communis]

Gene co-expression network

sample Hb_000061_130 Hb_000061_130 Hb_027380_180 Hb_027380_180 Hb_000061_130--Hb_027380_180 Hb_001085_270 Hb_001085_270 Hb_000061_130--Hb_001085_270 Hb_000193_120 Hb_000193_120 Hb_000061_130--Hb_000193_120 Hb_001240_020 Hb_001240_020 Hb_000061_130--Hb_001240_020 Hb_000567_410 Hb_000567_410 Hb_000061_130--Hb_000567_410 Hb_002909_130 Hb_002909_130 Hb_000061_130--Hb_002909_130 Hb_027380_180--Hb_000193_120 Hb_026048_070 Hb_026048_070 Hb_027380_180--Hb_026048_070 Hb_000103_010 Hb_000103_010 Hb_027380_180--Hb_000103_010 Hb_027380_180--Hb_001085_270 Hb_005474_060 Hb_005474_060 Hb_027380_180--Hb_005474_060 Hb_001369_170 Hb_001369_170 Hb_001085_270--Hb_001369_170 Hb_001085_270--Hb_000567_410 Hb_001085_270--Hb_002909_130 Hb_172221_010 Hb_172221_010 Hb_001085_270--Hb_172221_010 Hb_001085_270--Hb_000193_120 Hb_000181_300 Hb_000181_300 Hb_000193_120--Hb_000181_300 Hb_000193_120--Hb_000103_010 Hb_000012_100 Hb_000012_100 Hb_000193_120--Hb_000012_100 Hb_004156_040 Hb_004156_040 Hb_000193_120--Hb_004156_040 Hb_001634_040 Hb_001634_040 Hb_000193_120--Hb_001634_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090 Hb_147752_010 Hb_147752_010 Hb_001240_020--Hb_147752_010 Hb_000302_290 Hb_000302_290 Hb_001240_020--Hb_000302_290 Hb_000445_490 Hb_000445_490 Hb_001240_020--Hb_000445_490 Hb_000928_130 Hb_000928_130 Hb_001240_020--Hb_000928_130 Hb_001240_020--Hb_001085_270 Hb_006478_160 Hb_006478_160 Hb_000567_410--Hb_006478_160 Hb_000093_110 Hb_000093_110 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_002811_080 Hb_002811_080 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_002909_130--Hb_172221_010 Hb_000042_260 Hb_000042_260 Hb_002909_130--Hb_000042_260 Hb_000329_020 Hb_000329_020 Hb_002909_130--Hb_000329_020 Hb_001158_230 Hb_001158_230 Hb_002909_130--Hb_001158_230 Hb_008948_050 Hb_008948_050 Hb_002909_130--Hb_008948_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8161 12.0928 18.7603 11.2536 12.1586 19.9379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.8118 130.455 51.8212 38.9184 24.9969

CAGE analysis