Hb_000061_150

Information

Type -
Description -
Location Contig61: 136377-142852
Sequence    

Annotation

kegg
ID tcc:TCM_014095
description D-ribulose-5-phosphate-3-epimerase isoform 1
nr
ID XP_012080298.1
description PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
swissprot
ID Q43157
description Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1
trembl
ID A0A067K8F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11654 PE=4 SV=1
Gene Ontology
ID GO:0016857
description ribulose-phosphate 3- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50912: 136471-142764
cDNA
(Sanger)
(ID:Location)		 004_L12.ab1: 136471-142212

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_150 0.0 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
2 Hb_000194_010 0.0875706721 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
3 Hb_007594_040 0.1011762482 - - calcium lipid binding protein, putative [Ricinus communis]
4 Hb_002044_020 0.1059682947 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
5 Hb_005527_010 0.1086597551 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_006846_070 0.108765903 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
7 Hb_001454_150 0.1134090821 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
8 Hb_021650_010 0.1146679436 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
9 Hb_011310_140 0.120067008 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
10 Hb_021732_010 0.1240558505 - - biotin carboxylase [Vernicia fordii]
11 Hb_003304_030 0.1241100211 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_000284_130 0.1248633115 - - sodium-bile acid cotransporter, putative [Ricinus communis]
13 Hb_002986_090 0.1258055413 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_000181_060 0.1295692053 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
15 Hb_163950_070 0.1297045522 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
16 Hb_012305_100 0.1299733276 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
17 Hb_000976_190 0.1305695994 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
18 Hb_012653_030 0.1329621463 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_000613_120 0.1333639685 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
20 Hb_066967_020 0.1348270624 - - RAB6-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000061_150 Hb_000061_150 Hb_000194_010 Hb_000194_010 Hb_000061_150--Hb_000194_010 Hb_007594_040 Hb_007594_040 Hb_000061_150--Hb_007594_040 Hb_002044_020 Hb_002044_020 Hb_000061_150--Hb_002044_020 Hb_005527_010 Hb_005527_010 Hb_000061_150--Hb_005527_010 Hb_006846_070 Hb_006846_070 Hb_000061_150--Hb_006846_070 Hb_001454_150 Hb_001454_150 Hb_000061_150--Hb_001454_150 Hb_000194_010--Hb_001454_150 Hb_000181_060 Hb_000181_060 Hb_000194_010--Hb_000181_060 Hb_000976_190 Hb_000976_190 Hb_000194_010--Hb_000976_190 Hb_011310_140 Hb_011310_140 Hb_000194_010--Hb_011310_140 Hb_012653_030 Hb_012653_030 Hb_000194_010--Hb_012653_030 Hb_007594_040--Hb_002044_020 Hb_007594_040--Hb_006846_070 Hb_000613_120 Hb_000613_120 Hb_007594_040--Hb_000613_120 Hb_001789_160 Hb_001789_160 Hb_007594_040--Hb_001789_160 Hb_002027_320 Hb_002027_320 Hb_007594_040--Hb_002027_320 Hb_029695_070 Hb_029695_070 Hb_002044_020--Hb_029695_070 Hb_000094_100 Hb_000094_100 Hb_002044_020--Hb_000094_100 Hb_002044_020--Hb_001789_160 Hb_000645_180 Hb_000645_180 Hb_002044_020--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_002044_020--Hb_000265_070 Hb_000694_030 Hb_000694_030 Hb_005527_010--Hb_000694_030 Hb_005527_010--Hb_011310_140 Hb_002701_120 Hb_002701_120 Hb_005527_010--Hb_002701_120 Hb_005276_130 Hb_005276_130 Hb_005527_010--Hb_005276_130 Hb_066967_020 Hb_066967_020 Hb_005527_010--Hb_066967_020 Hb_000984_270 Hb_000984_270 Hb_006846_070--Hb_000984_270 Hb_000416_200 Hb_000416_200 Hb_006846_070--Hb_000416_200 Hb_004109_260 Hb_004109_260 Hb_006846_070--Hb_004109_260 Hb_000480_040 Hb_000480_040 Hb_006846_070--Hb_000480_040 Hb_001604_120 Hb_001604_120 Hb_006846_070--Hb_001604_120 Hb_001454_150--Hb_001789_160 Hb_005016_140 Hb_005016_140 Hb_001454_150--Hb_005016_140 Hb_031042_060 Hb_031042_060 Hb_001454_150--Hb_031042_060 Hb_000260_710 Hb_000260_710 Hb_001454_150--Hb_000260_710 Hb_004871_010 Hb_004871_010 Hb_001454_150--Hb_004871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.46326 1.82046 29.8818 7.93758 7.55297 8.6959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.78725 5.67569 7.00738 5.00157 22.794

CAGE analysis