Hb_000061_160

Information

Type -
Description -
Location Contig61: 143704-148031
Sequence    

Annotation

kegg
ID rcu:RCOM_1471270
description RING-H2 finger protein ATL1Q, putative
nr
ID XP_012080300.1
description PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
swissprot
ID Q8LBA0
description NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24 PE=1 SV=2
trembl
ID A0A067KHI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11655 PE=4 SV=1
Gene Ontology
ID GO:0005515
description nep1-interacting 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50914: 143809-147277 , PASA_asmbl_50915: 146426-147244
cDNA
(Sanger)
(ID:Location)		 013_P20.ab1: 146597-147234 , 049_H05.ab1: 144265-147277

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_160 0.0 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
2 Hb_001104_120 0.0929913054 - - -
3 Hb_000777_060 0.0937676679 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001621_180 0.0989508579 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
5 Hb_000563_590 0.106545774 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
6 Hb_000032_260 0.1068970273 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
7 Hb_000330_170 0.1107119392 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
8 Hb_005276_100 0.1115084195 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
9 Hb_007441_180 0.1163504874 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000599_090 0.1235622893 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
11 Hb_073973_110 0.1257822224 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
12 Hb_000252_040 0.1274644806 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
13 Hb_000012_450 0.1294862375 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
14 Hb_180992_010 0.131220105 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
15 Hb_000340_430 0.1314295173 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_002200_120 0.1318791012 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000831_060 0.1330283228 - - 17.5 kd heat shock family protein [Populus trichocarpa]
18 Hb_001035_030 0.1358374255 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
19 Hb_001252_140 0.1359278086 - - catalytic, putative [Ricinus communis]
20 Hb_000143_050 0.1362063203 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000061_160 Hb_000061_160 Hb_001104_120 Hb_001104_120 Hb_000061_160--Hb_001104_120 Hb_000777_060 Hb_000777_060 Hb_000061_160--Hb_000777_060 Hb_001621_180 Hb_001621_180 Hb_000061_160--Hb_001621_180 Hb_000563_590 Hb_000563_590 Hb_000061_160--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_000061_160--Hb_000032_260 Hb_000330_170 Hb_000330_170 Hb_000061_160--Hb_000330_170 Hb_001104_120--Hb_000563_590 Hb_007441_180 Hb_007441_180 Hb_001104_120--Hb_007441_180 Hb_001804_040 Hb_001804_040 Hb_001104_120--Hb_001804_040 Hb_001104_120--Hb_001621_180 Hb_001454_330 Hb_001454_330 Hb_001104_120--Hb_001454_330 Hb_000777_060--Hb_001621_180 Hb_000777_060--Hb_000330_170 Hb_002200_120 Hb_002200_120 Hb_000777_060--Hb_002200_120 Hb_000777_060--Hb_007441_180 Hb_001252_140 Hb_001252_140 Hb_000777_060--Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_001621_180--Hb_007441_180 Hb_001621_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_001621_180--Hb_009252_130 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_000563_590--Hb_001454_330 Hb_000089_130 Hb_000089_130 Hb_000563_590--Hb_000089_130 Hb_011139_020 Hb_011139_020 Hb_000563_590--Hb_011139_020 Hb_183963_020 Hb_183963_020 Hb_000563_590--Hb_183963_020 Hb_005867_040 Hb_005867_040 Hb_000032_260--Hb_005867_040 Hb_000143_050 Hb_000143_050 Hb_000032_260--Hb_000143_050 Hb_000032_260--Hb_001621_180 Hb_005276_100 Hb_005276_100 Hb_000032_260--Hb_005276_100 Hb_000032_260--Hb_183963_020 Hb_000603_220 Hb_000603_220 Hb_000330_170--Hb_000603_220 Hb_000330_170--Hb_002200_120 Hb_033448_010 Hb_033448_010 Hb_000330_170--Hb_033448_010 Hb_000369_090 Hb_000369_090 Hb_000330_170--Hb_000369_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
133.165 4.73192 2.62984 8.80433 153.807 139.379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.07 283.087 115.113 27.8127 3.19012

CAGE analysis