Hb_000061_180

Information

Type -
Description -
Location Contig61: 159339-162825
Sequence    

Annotation

kegg
ID rcu:RCOM_1471250
description exonuclease, putative
nr
ID XP_002514727.1
description exonuclease, putative [Ricinus communis]
swissprot
ID Q0V842
description Protein NEN2 OS=Arabidopsis thaliana GN=NEN2 PE=2 SV=1
trembl
ID B9RLV8
description Exonuclease, putative OS=Ricinus communis GN=RCOM_1471250 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein nen1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50916: 159425-162795
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_180 0.0 - - exonuclease, putative [Ricinus communis]
2 Hb_000375_390 0.0578668155 - - poly-A binding protein, putative [Ricinus communis]
3 Hb_000023_260 0.0611510774 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
4 Hb_007975_060 0.0640536101 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
5 Hb_004452_120 0.0652182838 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
6 Hb_133702_010 0.0704669263 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_002157_120 0.0705849511 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000028_520 0.0718254204 - - hypothetical protein L484_025125 [Morus notabilis]
9 Hb_000212_440 0.0719648967 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_032202_220 0.0739457202 - - ring finger protein, putative [Ricinus communis]
11 Hb_002774_190 0.0743509938 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
12 Hb_021374_030 0.0743782043 - - hypothetical protein RCOM_0351490 [Ricinus communis]
13 Hb_000035_090 0.0751081305 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
14 Hb_073973_090 0.0763506664 - - Aminotransferase ybdL, putative [Ricinus communis]
15 Hb_000078_140 0.0768204896 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
16 Hb_000212_120 0.077153681 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
17 Hb_000237_200 0.0776349468 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
18 Hb_005800_030 0.0782480321 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
19 Hb_000080_130 0.0785049626 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
20 Hb_000058_130 0.0789303198 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]

Gene co-expression network

sample Hb_000061_180 Hb_000061_180 Hb_000375_390 Hb_000375_390 Hb_000061_180--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_000061_180--Hb_000023_260 Hb_007975_060 Hb_007975_060 Hb_000061_180--Hb_007975_060 Hb_004452_120 Hb_004452_120 Hb_000061_180--Hb_004452_120 Hb_133702_010 Hb_133702_010 Hb_000061_180--Hb_133702_010 Hb_002157_120 Hb_002157_120 Hb_000061_180--Hb_002157_120 Hb_000375_390--Hb_000023_260 Hb_000035_090 Hb_000035_090 Hb_000375_390--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_000375_390--Hb_000230_400 Hb_000347_430 Hb_000347_430 Hb_000375_390--Hb_000347_430 Hb_021374_030 Hb_021374_030 Hb_000375_390--Hb_021374_030 Hb_000212_230 Hb_000212_230 Hb_000023_260--Hb_000212_230 Hb_001314_080 Hb_001314_080 Hb_000023_260--Hb_001314_080 Hb_000023_260--Hb_133702_010 Hb_000023_260--Hb_007975_060 Hb_004754_050 Hb_004754_050 Hb_007975_060--Hb_004754_050 Hb_007975_060--Hb_002157_120 Hb_013405_020 Hb_013405_020 Hb_007975_060--Hb_013405_020 Hb_007975_060--Hb_133702_010 Hb_012150_030 Hb_012150_030 Hb_004452_120--Hb_012150_030 Hb_010863_050 Hb_010863_050 Hb_004452_120--Hb_010863_050 Hb_004452_120--Hb_133702_010 Hb_000364_050 Hb_000364_050 Hb_004452_120--Hb_000364_050 Hb_035273_020 Hb_035273_020 Hb_004452_120--Hb_035273_020 Hb_005800_030 Hb_005800_030 Hb_133702_010--Hb_005800_030 Hb_004545_110 Hb_004545_110 Hb_133702_010--Hb_004545_110 Hb_000721_030 Hb_000721_030 Hb_133702_010--Hb_000721_030 Hb_003878_090 Hb_003878_090 Hb_133702_010--Hb_003878_090 Hb_000028_520 Hb_000028_520 Hb_002157_120--Hb_000028_520 Hb_002157_120--Hb_004754_050 Hb_000058_130 Hb_000058_130 Hb_002157_120--Hb_000058_130 Hb_013575_010 Hb_013575_010 Hb_002157_120--Hb_013575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.29526 4.13008 10.0676 8.83847 5.10501 5.69055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.38021 6.57862 4.87283 4.88867 10.4974

CAGE analysis