Hb_000061_200

Information

Type -
Description -
Location Contig61: 169359-171460
Sequence    

Annotation

kegg
ID rcu:RCOM_1513390
description nitrate transporter, putative
nr
ID XP_002511510.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q3E8X3
description Protein NRT1/ PTR FAMILY 2.8 OS=Arabidopsis thaliana GN=NPF2.8 PE=2 SV=2
trembl
ID B9R935
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_1513390 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_200 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_000388_030 0.3177272347 - - hypothetical protein JCGZ_13427 [Jatropha curcas]
3 Hb_006726_010 0.3266610986 - - PREDICTED: uncharacterized protein K02A2.6-like [Nicotiana sylvestris]
4 Hb_000027_040 0.3451593933 - - PREDICTED: uncharacterized protein LOC105636980 [Jatropha curcas]
5 Hb_000389_190 0.3502445208 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Jatropha curcas]
6 Hb_004453_100 0.3507442886 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000712_050 0.3528505849 - - PREDICTED: inositol oxygenase 1-like isoform X1 [Citrus sinensis]
8 Hb_048476_100 0.3542135106 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]
9 Hb_011671_170 0.3552362058 - - PREDICTED: protein DYAD [Jatropha curcas]
10 Hb_000184_210 0.3552974551 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
11 Hb_032717_020 0.3596054336 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
12 Hb_000139_430 0.3663769766 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
13 Hb_110390_010 0.3711225142 - - hypothetical protein JCGZ_19741 [Jatropha curcas]
14 Hb_000962_050 0.3750163366 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
15 Hb_000321_130 0.3766579649 - - Alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_001238_050 0.3771869313 - - -
17 Hb_000028_070 0.3777085179 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
18 Hb_001623_320 0.3791630949 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 isoform X1 [Populus euphratica]
19 Hb_000703_040 0.3796006518 - - hypothetical protein RCOM_1177160 [Ricinus communis]
20 Hb_078806_010 0.3810855012 - - hypothetical protein CISIN_1g031839mg [Citrus sinensis]

Gene co-expression network

sample Hb_000061_200 Hb_000061_200 Hb_000388_030 Hb_000388_030 Hb_000061_200--Hb_000388_030 Hb_006726_010 Hb_006726_010 Hb_000061_200--Hb_006726_010 Hb_000027_040 Hb_000027_040 Hb_000061_200--Hb_000027_040 Hb_000389_190 Hb_000389_190 Hb_000061_200--Hb_000389_190 Hb_004453_100 Hb_004453_100 Hb_000061_200--Hb_004453_100 Hb_000712_050 Hb_000712_050 Hb_000061_200--Hb_000712_050 Hb_004324_160 Hb_004324_160 Hb_000388_030--Hb_004324_160 Hb_002259_190 Hb_002259_190 Hb_000388_030--Hb_002259_190 Hb_000388_030--Hb_006726_010 Hb_000321_130 Hb_000321_130 Hb_000388_030--Hb_000321_130 Hb_054865_070 Hb_054865_070 Hb_000388_030--Hb_054865_070 Hb_007904_240 Hb_007904_240 Hb_006726_010--Hb_007904_240 Hb_000069_770 Hb_000069_770 Hb_006726_010--Hb_000069_770 Hb_021576_020 Hb_021576_020 Hb_006726_010--Hb_021576_020 Hb_000599_320 Hb_000599_320 Hb_006726_010--Hb_000599_320 Hb_000329_270 Hb_000329_270 Hb_000027_040--Hb_000329_270 Hb_048476_100 Hb_048476_100 Hb_000027_040--Hb_048476_100 Hb_000340_500 Hb_000340_500 Hb_000027_040--Hb_000340_500 Hb_032717_020 Hb_032717_020 Hb_000027_040--Hb_032717_020 Hb_000258_250 Hb_000258_250 Hb_000027_040--Hb_000258_250 Hb_006671_010 Hb_006671_010 Hb_000027_040--Hb_006671_010 Hb_000001_070 Hb_000001_070 Hb_000389_190--Hb_000001_070 Hb_000123_160 Hb_000123_160 Hb_000389_190--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_000389_190--Hb_000239_030 Hb_002217_450 Hb_002217_450 Hb_000389_190--Hb_002217_450 Hb_002811_080 Hb_002811_080 Hb_000389_190--Hb_002811_080 Hb_004324_150 Hb_004324_150 Hb_000389_190--Hb_004324_150 Hb_007904_250 Hb_007904_250 Hb_004453_100--Hb_007904_250 Hb_000197_200 Hb_000197_200 Hb_004453_100--Hb_000197_200 Hb_000107_470 Hb_000107_470 Hb_004453_100--Hb_000107_470 Hb_004342_020 Hb_004342_020 Hb_004453_100--Hb_004342_020 Hb_003038_250 Hb_003038_250 Hb_004453_100--Hb_003038_250 Hb_023765_020 Hb_023765_020 Hb_004453_100--Hb_023765_020 Hb_005489_100 Hb_005489_100 Hb_000712_050--Hb_005489_100 Hb_003994_190 Hb_003994_190 Hb_000712_050--Hb_003994_190 Hb_001195_360 Hb_001195_360 Hb_000712_050--Hb_001195_360 Hb_002150_060 Hb_002150_060 Hb_000712_050--Hb_002150_060 Hb_002194_090 Hb_002194_090 Hb_000712_050--Hb_002194_090 Hb_000215_080 Hb_000215_080 Hb_000712_050--Hb_000215_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.040826 0.00780854 0.0108944 0.0200923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0389249 0.036821 0.00774942 0

CAGE analysis