Hb_000061_210

Information

Type transcription factor
Description TF Family: Pseudo ARR-B
Location Contig61: 172042-177804
Sequence    

Annotation

kegg
ID rcu:RCOM_1471230
description sensory transduction histidine kinase, putative
nr
ID XP_012080306.1
description PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
swissprot
ID Q9LKL2
description Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1
trembl
ID A0A067K8G3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11659 PE=4 SV=1
Gene Ontology
ID GO:0005515
description two-component response regulator-like aprr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50917: 171960-172758 , PASA_asmbl_50918: 173006-177289 , PASA_asmbl_50919: 173006-175963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_210 0.0 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
2 Hb_103118_010 0.0588964837 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
3 Hb_008453_030 0.0667997175 - - Thioredoxin superfamily protein [Theobroma cacao]
4 Hb_002408_020 0.0669999907 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
5 Hb_012675_050 0.0703148551 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000421_220 0.0742244788 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
7 Hb_001049_110 0.0790787605 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_000107_160 0.0803956611 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
9 Hb_002811_130 0.0816413014 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
10 Hb_002183_060 0.0821420896 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
11 Hb_000985_030 0.082468422 - - PREDICTED: RRP15-like protein [Populus euphratica]
12 Hb_004934_100 0.0825132664 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000046_050 0.0829062706 - - PREDICTED: LEC14B homolog [Jatropha curcas]
14 Hb_000783_020 0.0835521254 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
15 Hb_000331_260 0.0835527932 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
16 Hb_011457_050 0.0842862356 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
17 Hb_002154_100 0.0844210187 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
18 Hb_004324_270 0.0845061287 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
19 Hb_156279_020 0.0845345701 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
20 Hb_000696_330 0.0863807374 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]

Gene co-expression network

sample Hb_000061_210 Hb_000061_210 Hb_103118_010 Hb_103118_010 Hb_000061_210--Hb_103118_010 Hb_008453_030 Hb_008453_030 Hb_000061_210--Hb_008453_030 Hb_002408_020 Hb_002408_020 Hb_000061_210--Hb_002408_020 Hb_012675_050 Hb_012675_050 Hb_000061_210--Hb_012675_050 Hb_000421_220 Hb_000421_220 Hb_000061_210--Hb_000421_220 Hb_001049_110 Hb_001049_110 Hb_000061_210--Hb_001049_110 Hb_103118_010--Hb_012675_050 Hb_000861_020 Hb_000861_020 Hb_103118_010--Hb_000861_020 Hb_003688_150 Hb_003688_150 Hb_103118_010--Hb_003688_150 Hb_103118_010--Hb_002408_020 Hb_000046_050 Hb_000046_050 Hb_103118_010--Hb_000046_050 Hb_004934_100 Hb_004934_100 Hb_008453_030--Hb_004934_100 Hb_008453_030--Hb_000421_220 Hb_000107_160 Hb_000107_160 Hb_008453_030--Hb_000107_160 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_000081_160 Hb_000081_160 Hb_008453_030--Hb_000081_160 Hb_000260_030 Hb_000260_030 Hb_002408_020--Hb_000260_030 Hb_004324_270 Hb_004324_270 Hb_002408_020--Hb_004324_270 Hb_029879_130 Hb_029879_130 Hb_002408_020--Hb_029879_130 Hb_002408_020--Hb_012675_050 Hb_001322_110 Hb_001322_110 Hb_002408_020--Hb_001322_110 Hb_011909_100 Hb_011909_100 Hb_012675_050--Hb_011909_100 Hb_012675_050--Hb_000107_160 Hb_012675_050--Hb_000046_050 Hb_002183_060 Hb_002183_060 Hb_000421_220--Hb_002183_060 Hb_000421_220--Hb_004934_100 Hb_025240_040 Hb_025240_040 Hb_000421_220--Hb_025240_040 Hb_001234_100 Hb_001234_100 Hb_000421_220--Hb_001234_100 Hb_015934_070 Hb_015934_070 Hb_000421_220--Hb_015934_070 Hb_015941_020 Hb_015941_020 Hb_001049_110--Hb_015941_020 Hb_005686_090 Hb_005686_090 Hb_001049_110--Hb_005686_090 Hb_018133_090 Hb_018133_090 Hb_001049_110--Hb_018133_090 Hb_000295_080 Hb_000295_080 Hb_001049_110--Hb_000295_080 Hb_000556_090 Hb_000556_090 Hb_001049_110--Hb_000556_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.65094 7.42561 8.668 9.72619 12.2904 13.5712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6792 21.9188 15.3782 9.85243 17.7859

CAGE analysis