Hb_000061_230

Information

Type -
Description -
Location Contig61: 193697-195064
Sequence    

Annotation

kegg
ID rcu:RCOM_1471180
description Xyloglucan 6-xylosyltransferase, putative (EC:2.4.2.39)
nr
ID XP_012080311.1
description PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
swissprot
ID Q9LF80
description Putative glycosyltransferase 3 OS=Arabidopsis thaliana GN=GT3 PE=2 SV=1
trembl
ID B9RLV1
description Xyloglucan 6-xylosyltransferase, putative OS=Ricinus communis GN=RCOM_1471180 PE=4 SV=1
Gene Ontology
ID GO:0005794
description glycosyltransferase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50922: 193436-195427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_230 0.0 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
2 Hb_000110_140 0.0733636237 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
3 Hb_038574_010 0.0969862117 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
4 Hb_000173_470 0.1003265373 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
5 Hb_002311_360 0.1012191936 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
6 Hb_003607_130 0.1023015327 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_000454_090 0.1039092051 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
8 Hb_005653_070 0.1083500205 - - K+ transport growth defect-like protein [Hevea brasiliensis]
9 Hb_000008_440 0.109197512 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
10 Hb_000220_100 0.1126346041 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
11 Hb_000252_100 0.114657417 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
12 Hb_000012_310 0.115794423 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
13 Hb_000615_050 0.1159194805 - - Potassium transporter 11 family protein [Populus trichocarpa]
14 Hb_000964_030 0.1175740161 - - ADP/ATP carrier 2 [Theobroma cacao]
15 Hb_032202_040 0.1178501383 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
16 Hb_006059_010 0.1180812794 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
17 Hb_000856_010 0.118413026 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
18 Hb_000140_380 0.1186556469 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
19 Hb_000505_150 0.1195044038 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
20 Hb_000172_100 0.1197576544 - - PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]

Gene co-expression network

sample Hb_000061_230 Hb_000061_230 Hb_000110_140 Hb_000110_140 Hb_000061_230--Hb_000110_140 Hb_038574_010 Hb_038574_010 Hb_000061_230--Hb_038574_010 Hb_000173_470 Hb_000173_470 Hb_000061_230--Hb_000173_470 Hb_002311_360 Hb_002311_360 Hb_000061_230--Hb_002311_360 Hb_003607_130 Hb_003607_130 Hb_000061_230--Hb_003607_130 Hb_000454_090 Hb_000454_090 Hb_000061_230--Hb_000454_090 Hb_007218_120 Hb_007218_120 Hb_000110_140--Hb_007218_120 Hb_003376_180 Hb_003376_180 Hb_000110_140--Hb_003376_180 Hb_000110_140--Hb_000454_090 Hb_000110_140--Hb_000173_470 Hb_002660_170 Hb_002660_170 Hb_000110_140--Hb_002660_170 Hb_005653_070 Hb_005653_070 Hb_038574_010--Hb_005653_070 Hb_000964_030 Hb_000964_030 Hb_038574_010--Hb_000964_030 Hb_000069_640 Hb_000069_640 Hb_038574_010--Hb_000069_640 Hb_008748_030 Hb_008748_030 Hb_038574_010--Hb_008748_030 Hb_000753_230 Hb_000753_230 Hb_038574_010--Hb_000753_230 Hb_003913_130 Hb_003913_130 Hb_038574_010--Hb_003913_130 Hb_000465_300 Hb_000465_300 Hb_000173_470--Hb_000465_300 Hb_000173_470--Hb_003607_130 Hb_000173_470--Hb_000753_230 Hb_000749_050 Hb_000749_050 Hb_000173_470--Hb_000749_050 Hb_023771_010 Hb_023771_010 Hb_000173_470--Hb_023771_010 Hb_000890_150 Hb_000890_150 Hb_000173_470--Hb_000890_150 Hb_002704_070 Hb_002704_070 Hb_002311_360--Hb_002704_070 Hb_000856_010 Hb_000856_010 Hb_002311_360--Hb_000856_010 Hb_009803_050 Hb_009803_050 Hb_002311_360--Hb_009803_050 Hb_000928_070 Hb_000928_070 Hb_002311_360--Hb_000928_070 Hb_000309_130 Hb_000309_130 Hb_002311_360--Hb_000309_130 Hb_000008_440 Hb_000008_440 Hb_002311_360--Hb_000008_440 Hb_008279_040 Hb_008279_040 Hb_003607_130--Hb_008279_040 Hb_001259_050 Hb_001259_050 Hb_003607_130--Hb_001259_050 Hb_005245_100 Hb_005245_100 Hb_003607_130--Hb_005245_100 Hb_001717_010 Hb_001717_010 Hb_003607_130--Hb_001717_010 Hb_020178_040 Hb_020178_040 Hb_003607_130--Hb_020178_040 Hb_000173_410 Hb_000173_410 Hb_000454_090--Hb_000173_410 Hb_000252_100 Hb_000252_100 Hb_000454_090--Hb_000252_100 Hb_004078_040 Hb_004078_040 Hb_000454_090--Hb_004078_040 Hb_000220_100 Hb_000220_100 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_005765_050 Hb_005765_050 Hb_000454_090--Hb_005765_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.854 27.1062 16.0428 39.1137 8.05811 8.54049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7609 25.8061 32.9525 14.6524 30.472

CAGE analysis