Hb_000061_250

Information

Type -
Description -
Location Contig61: 204730-213538
Sequence    

Annotation

kegg
ID pop:POPTR_0012s07000g
description POPTRDRAFT_772889; hypothetical protein
nr
ID KDP31289.1
description hypothetical protein JCGZ_11665 [Jatropha curcas]
swissprot
ID Q1L5Z9
description LON peptidase N-terminal domain and RING finger protein 2 OS=Homo sapiens GN=LONRF2 PE=2 SV=3
trembl
ID A0A067KHJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11665 PE=4 SV=1
Gene Ontology
ID GO:0004176
description probable receptor-like protein kinase at5g61350

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50926: 204807-213693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_250 0.0 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
2 Hb_000108_150 0.0595748299 - - alpha/beta hydrolase, putative [Ricinus communis]
3 Hb_000045_050 0.0683445589 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
4 Hb_000544_080 0.0906753356 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
5 Hb_000264_280 0.0911540255 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
6 Hb_003948_020 0.091770205 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
7 Hb_000390_210 0.0981499877 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
8 Hb_071079_020 0.0996896494 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_032631_030 0.1007745129 - - phosphatidic acid phosphatase, putative [Ricinus communis]
10 Hb_002411_100 0.1051300094 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
11 Hb_005181_120 0.1055890906 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000679_080 0.1062482406 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
13 Hb_009393_130 0.1070716851 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
14 Hb_007904_060 0.1073085441 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
15 Hb_010557_010 0.1085847679 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
16 Hb_002811_250 0.109787976 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
17 Hb_011519_050 0.1099965462 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
18 Hb_000099_170 0.1104053498 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
19 Hb_010721_020 0.1105868626 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
20 Hb_006420_010 0.1114136125 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]

Gene co-expression network

sample Hb_000061_250 Hb_000061_250 Hb_000108_150 Hb_000108_150 Hb_000061_250--Hb_000108_150 Hb_000045_050 Hb_000045_050 Hb_000061_250--Hb_000045_050 Hb_000544_080 Hb_000544_080 Hb_000061_250--Hb_000544_080 Hb_000264_280 Hb_000264_280 Hb_000061_250--Hb_000264_280 Hb_003948_020 Hb_003948_020 Hb_000061_250--Hb_003948_020 Hb_000390_210 Hb_000390_210 Hb_000061_250--Hb_000390_210 Hb_000108_150--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_005181_120 Hb_005181_120 Hb_000108_150--Hb_005181_120 Hb_000108_150--Hb_000264_280 Hb_007904_060 Hb_007904_060 Hb_000108_150--Hb_007904_060 Hb_000045_050--Hb_000544_080 Hb_000045_050--Hb_003948_020 Hb_002811_250 Hb_002811_250 Hb_000045_050--Hb_002811_250 Hb_000045_050--Hb_005181_120 Hb_011519_050 Hb_011519_050 Hb_000544_080--Hb_011519_050 Hb_058620_080 Hb_058620_080 Hb_000544_080--Hb_058620_080 Hb_009393_130 Hb_009393_130 Hb_000544_080--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_000544_080--Hb_005488_190 Hb_003664_030 Hb_003664_030 Hb_000264_280--Hb_003664_030 Hb_001269_500 Hb_001269_500 Hb_000264_280--Hb_001269_500 Hb_000264_280--Hb_003948_020 Hb_001649_030 Hb_001649_030 Hb_000264_280--Hb_001649_030 Hb_002411_100 Hb_002411_100 Hb_003948_020--Hb_002411_100 Hb_003948_020--Hb_003664_030 Hb_010557_010 Hb_010557_010 Hb_003948_020--Hb_010557_010 Hb_001544_050 Hb_001544_050 Hb_000390_210--Hb_001544_050 Hb_000749_260 Hb_000749_260 Hb_000390_210--Hb_000749_260 Hb_147378_010 Hb_147378_010 Hb_000390_210--Hb_147378_010 Hb_143004_020 Hb_143004_020 Hb_000390_210--Hb_143004_020 Hb_000322_030 Hb_000322_030 Hb_000390_210--Hb_000322_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54811 3.38118 23.0485 13.8372 2.24391 1.76706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39502 2.01902 0.909762 2.19713 26.924

CAGE analysis