Hb_000061_300

Information

Type -
Description -
Location Contig61: 260282-274483
Sequence    

Annotation

kegg
ID pop:POPTR_0015s072201
description hypothetical protein
nr
ID KDP31292.1
description hypothetical protein JCGZ_11668 [Jatropha curcas]
swissprot
ID Q9FLQ7
description Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3
trembl
ID A0A067K5A8
description Formin-like protein OS=Jatropha curcas GN=JCGZ_11668 PE=3 SV=1
Gene Ontology
ID GO:0005884
description formin-like protein 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50930: 260157-262095 , PASA_asmbl_50931: 260157-270828 , PASA_asmbl_50932: 262566-263062 , PASA_asmbl_50933: 263150-270473 , PASA_asmbl_50935: 271453-302038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_300 0.0 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
2 Hb_001575_020 0.081667154 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001616_060 0.0900710246 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
4 Hb_003581_260 0.0962084931 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
5 Hb_007382_150 0.0970232654 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
6 Hb_000046_290 0.102219855 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
7 Hb_002603_160 0.1036340298 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
8 Hb_005000_070 0.1048638971 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
9 Hb_002876_120 0.1049198663 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
10 Hb_001160_030 0.1066368315 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
11 Hb_000975_300 0.1074738029 - - Rab2 [Hevea brasiliensis]
12 Hb_002182_030 0.1080746634 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
13 Hb_003938_180 0.1087797513 - - lesion inducing family protein [Populus trichocarpa]
14 Hb_000223_150 0.1091333649 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
15 Hb_131864_040 0.1102351634 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
16 Hb_003632_010 0.1110150507 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001141_280 0.1113367309 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
18 Hb_029866_020 0.1116424935 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
19 Hb_008289_060 0.1118081117 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
20 Hb_000431_010 0.1123376552 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]

Gene co-expression network

sample Hb_000061_300 Hb_000061_300 Hb_001575_020 Hb_001575_020 Hb_000061_300--Hb_001575_020 Hb_001616_060 Hb_001616_060 Hb_000061_300--Hb_001616_060 Hb_003581_260 Hb_003581_260 Hb_000061_300--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000061_300--Hb_007382_150 Hb_000046_290 Hb_000046_290 Hb_000061_300--Hb_000046_290 Hb_002603_160 Hb_002603_160 Hb_000061_300--Hb_002603_160 Hb_001575_020--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_001575_020--Hb_003929_120 Hb_002097_060 Hb_002097_060 Hb_001575_020--Hb_002097_060 Hb_000069_100 Hb_000069_100 Hb_001575_020--Hb_000069_100 Hb_001160_030 Hb_001160_030 Hb_001575_020--Hb_001160_030 Hb_001616_060--Hb_000069_100 Hb_002078_460 Hb_002078_460 Hb_001616_060--Hb_002078_460 Hb_001616_060--Hb_007382_150 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_002876_120 Hb_002876_120 Hb_003581_260--Hb_002876_120 Hb_001159_080 Hb_001159_080 Hb_003581_260--Hb_001159_080 Hb_007594_120 Hb_007594_120 Hb_003581_260--Hb_007594_120 Hb_002182_030 Hb_002182_030 Hb_003581_260--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_003581_260--Hb_001135_210 Hb_007382_150--Hb_002097_060 Hb_006573_220 Hb_006573_220 Hb_007382_150--Hb_006573_220 Hb_007382_150--Hb_000069_100 Hb_007943_090 Hb_007943_090 Hb_007382_150--Hb_007943_090 Hb_003376_030 Hb_003376_030 Hb_007382_150--Hb_003376_030 Hb_002471_080 Hb_002471_080 Hb_000046_290--Hb_002471_080 Hb_027625_010 Hb_027625_010 Hb_000046_290--Hb_027625_010 Hb_001775_110 Hb_001775_110 Hb_000046_290--Hb_001775_110 Hb_001360_050 Hb_001360_050 Hb_000046_290--Hb_001360_050 Hb_008544_010 Hb_008544_010 Hb_000046_290--Hb_008544_010 Hb_001191_090 Hb_001191_090 Hb_000046_290--Hb_001191_090 Hb_131864_040 Hb_131864_040 Hb_002603_160--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_002603_160--Hb_003018_190 Hb_006846_110 Hb_006846_110 Hb_002603_160--Hb_006846_110 Hb_005188_090 Hb_005188_090 Hb_002603_160--Hb_005188_090 Hb_000223_150 Hb_000223_150 Hb_002603_160--Hb_000223_150 Hb_001141_280 Hb_001141_280 Hb_002603_160--Hb_001141_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5126 6.82592 6.46741 7.57822 16.9454 21.3157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.2993 47.3671 66.6874 10.6164 14.5331

CAGE analysis