Hb_000061_320

Information

Type -
Description -
Location Contig61: 296362-300336
Sequence    

Annotation

kegg
ID rcu:RCOM_1471010
description endonuclease, putative
nr
ID XP_012080318.1
description PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11670 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hnh endonuclease domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50934: 296212-299646 , PASA_asmbl_50935: 271453-302038 , PASA_asmbl_50936: 300058-300304 , PASA_asmbl_50937: 301026-303075
cDNA
(Sanger)
(ID:Location)		 010_J19.ab1: 301308-303075 , 044_C17.ab1: 301307-303075 , 047_B10.ab1: 301307-303075

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_320 0.0 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
2 Hb_012338_010 0.0731589417 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009954_040 0.0745821205 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
4 Hb_003175_040 0.0757646743 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
5 Hb_000300_610 0.078099854 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
6 Hb_003020_230 0.0792485055 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
7 Hb_026527_030 0.0831645458 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
8 Hb_002449_020 0.0833871265 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
9 Hb_001832_010 0.0837100982 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
10 Hb_117134_010 0.0864608269 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
11 Hb_004837_140 0.0868360468 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
12 Hb_007254_040 0.0881353456 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
13 Hb_024185_020 0.0887948031 - - -
14 Hb_001691_210 0.0890524012 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
15 Hb_001833_110 0.0908887467 - - conserved hypothetical protein [Ricinus communis]
16 Hb_148209_120 0.0913049447 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
17 Hb_004048_070 0.0932335294 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
18 Hb_005997_010 0.0934119695 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
19 Hb_006400_030 0.0956142685 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
20 Hb_003408_020 0.0966612069 - - hypothetical protein RCOM_0453040 [Ricinus communis]

Gene co-expression network

sample Hb_000061_320 Hb_000061_320 Hb_012338_010 Hb_012338_010 Hb_000061_320--Hb_012338_010 Hb_009954_040 Hb_009954_040 Hb_000061_320--Hb_009954_040 Hb_003175_040 Hb_003175_040 Hb_000061_320--Hb_003175_040 Hb_000300_610 Hb_000300_610 Hb_000061_320--Hb_000300_610 Hb_003020_230 Hb_003020_230 Hb_000061_320--Hb_003020_230 Hb_026527_030 Hb_026527_030 Hb_000061_320--Hb_026527_030 Hb_004837_140 Hb_004837_140 Hb_012338_010--Hb_004837_140 Hb_000170_010 Hb_000170_010 Hb_012338_010--Hb_000170_010 Hb_012338_010--Hb_000300_610 Hb_004108_230 Hb_004108_230 Hb_012338_010--Hb_004108_230 Hb_005432_030 Hb_005432_030 Hb_012338_010--Hb_005432_030 Hb_009954_040--Hb_003020_230 Hb_009954_040--Hb_000300_610 Hb_005997_010 Hb_005997_010 Hb_009954_040--Hb_005997_010 Hb_002685_190 Hb_002685_190 Hb_009954_040--Hb_002685_190 Hb_000103_090 Hb_000103_090 Hb_009954_040--Hb_000103_090 Hb_003175_040--Hb_004108_230 Hb_003408_020 Hb_003408_020 Hb_003175_040--Hb_003408_020 Hb_002918_200 Hb_002918_200 Hb_003175_040--Hb_002918_200 Hb_003175_040--Hb_004837_140 Hb_001691_210 Hb_001691_210 Hb_003175_040--Hb_001691_210 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070 Hb_000486_010 Hb_000486_010 Hb_000300_610--Hb_000486_010 Hb_000300_610--Hb_002685_190 Hb_001278_110 Hb_001278_110 Hb_000300_610--Hb_001278_110 Hb_003020_230--Hb_005997_010 Hb_000371_080 Hb_000371_080 Hb_003020_230--Hb_000371_080 Hb_000613_140 Hb_000613_140 Hb_003020_230--Hb_000613_140 Hb_003020_230--Hb_000170_010 Hb_001824_070 Hb_001824_070 Hb_003020_230--Hb_001824_070 Hb_000331_080 Hb_000331_080 Hb_026527_030--Hb_000331_080 Hb_024185_020 Hb_024185_020 Hb_026527_030--Hb_024185_020 Hb_002253_070 Hb_002253_070 Hb_026527_030--Hb_002253_070 Hb_026527_030--Hb_009954_040 Hb_004994_100 Hb_004994_100 Hb_026527_030--Hb_004994_100 Hb_002685_020 Hb_002685_020 Hb_026527_030--Hb_002685_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7281 3.35067 6.34341 6.26551 17.3771 21.5614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.6284 21.8446 23.0311 13.0432 7.49361

CAGE analysis