Hb_000061_330

Information

Type -
Description -
Location Contig61: 301073-303050
Sequence    

Annotation

kegg
ID mus:103970798
description eukaryotic translation initiation factor 5A-5
nr
ID AAQ08197.1
description eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
swissprot
ID Q9AXJ4
description Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2
trembl
ID Q71F45
description Eukaryotic translation initiation factor 5A OS=Hevea brasiliensis GN=eIF-5A PE=2 SV=1
Gene Ontology
ID GO:0003746
description initiation factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50935: 271453-302038 , PASA_asmbl_50937: 301026-303075
cDNA
(Sanger)
(ID:Location)		 010_J19.ab1: 301308-303075 , 044_C17.ab1: 301307-303075 , 047_B10.ab1: 301307-303075

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_330 0.0 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
2 Hb_010883_150 0.0793664955 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
3 Hb_005686_110 0.0805871564 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
4 Hb_011931_050 0.0927026286 - - fk506-binding protein, putative [Ricinus communis]
5 Hb_000479_180 0.0927525318 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001584_070 0.0936872464 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000634_050 0.0943871045 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
8 Hb_012515_010 0.0945453196 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
9 Hb_000365_380 0.0964694309 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008847_020 0.0965109314 - - 40S ribosomal protein S17C [Hevea brasiliensis]
11 Hb_003050_230 0.0966689648 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000362_210 0.0986534297 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
13 Hb_007166_050 0.1005642052 - - -
14 Hb_025193_050 0.1012407329 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
15 Hb_001235_070 0.1012697125 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000333_090 0.1022257713 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
17 Hb_002781_020 0.1032580099 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
18 Hb_000371_080 0.1048582527 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
19 Hb_001754_010 0.1055058073 - - translationally controlled tumor protein [Hevea brasiliensis]
20 Hb_003086_110 0.1058228053 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]

Gene co-expression network

sample Hb_000061_330 Hb_000061_330 Hb_010883_150 Hb_010883_150 Hb_000061_330--Hb_010883_150 Hb_005686_110 Hb_005686_110 Hb_000061_330--Hb_005686_110 Hb_011931_050 Hb_011931_050 Hb_000061_330--Hb_011931_050 Hb_000479_180 Hb_000479_180 Hb_000061_330--Hb_000479_180 Hb_001584_070 Hb_001584_070 Hb_000061_330--Hb_001584_070 Hb_000634_050 Hb_000634_050 Hb_000061_330--Hb_000634_050 Hb_010883_150--Hb_001584_070 Hb_008847_020 Hb_008847_020 Hb_010883_150--Hb_008847_020 Hb_000526_150 Hb_000526_150 Hb_010883_150--Hb_000526_150 Hb_000840_190 Hb_000840_190 Hb_010883_150--Hb_000840_190 Hb_002311_320 Hb_002311_320 Hb_010883_150--Hb_002311_320 Hb_000371_080 Hb_000371_080 Hb_005686_110--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_005686_110--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_005686_110--Hb_022250_040 Hb_001235_070 Hb_001235_070 Hb_005686_110--Hb_001235_070 Hb_001369_050 Hb_001369_050 Hb_005686_110--Hb_001369_050 Hb_009711_030 Hb_009711_030 Hb_005686_110--Hb_009711_030 Hb_070986_010 Hb_070986_010 Hb_011931_050--Hb_070986_010 Hb_000316_110 Hb_000316_110 Hb_011931_050--Hb_000316_110 Hb_001623_240 Hb_001623_240 Hb_011931_050--Hb_001623_240 Hb_000045_190 Hb_000045_190 Hb_011931_050--Hb_000045_190 Hb_011931_050--Hb_000634_050 Hb_004595_020 Hb_004595_020 Hb_000479_180--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_000479_180--Hb_011139_020 Hb_000362_210 Hb_000362_210 Hb_000479_180--Hb_000362_210 Hb_012515_010 Hb_012515_010 Hb_000479_180--Hb_012515_010 Hb_000479_180--Hb_000634_050 Hb_000465_060 Hb_000465_060 Hb_001584_070--Hb_000465_060 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001824_070 Hb_001824_070 Hb_001584_070--Hb_001824_070 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_000634_050--Hb_000417_110 Hb_000634_050--Hb_000045_190 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000798_030 Hb_000798_030 Hb_000634_050--Hb_000798_030 Hb_000634_050--Hb_000526_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
565.857 135.69 81.1118 261.593 398.242 878.933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1317.79 1086.25 441.274 251.007 63.9364

CAGE analysis