Hb_000061_370

Information

Type -
Description -
Location Contig61: 322609-326048
Sequence    

Annotation

kegg
ID vvi:100250232
description zinc finger RNA-binding protein
nr
ID XP_002284718.1
description PREDICTED: zinc finger RNA-binding protein [Vitis vinifera]
swissprot
ID Q6PCR6
description Zinc finger RNA-binding protein OS=Danio rerio GN=zfr PE=2 SV=2
trembl
ID A0A061FWM8
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_014123 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger rna-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50941: 322593-323326 , PASA_asmbl_50942: 322733-325578 , PASA_asmbl_50943: 323486-325521 , PASA_asmbl_50944: 324433-324541 , PASA_asmbl_50945: 325878-326117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_370 0.0 - - PREDICTED: zinc finger RNA-binding protein [Vitis vinifera]
2 Hb_015746_010 0.0714845317 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
3 Hb_001677_210 0.0794500955 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
4 Hb_002043_190 0.0807491368 - - rwd domain-containing protein, putative [Ricinus communis]
5 Hb_001404_100 0.0824213173 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
6 Hb_000327_120 0.0848382711 - - FGFR1 oncogene partner, putative [Ricinus communis]
7 Hb_006502_070 0.0856662449 - - separase, putative [Ricinus communis]
8 Hb_007951_060 0.0877969254 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
9 Hb_005503_030 0.0885819367 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
10 Hb_002081_130 0.089944863 - - serine carboxypeptidase, putative [Ricinus communis]
11 Hb_066182_010 0.0900486763 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
12 Hb_039946_020 0.0901760686 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000640_240 0.0903663156 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
14 Hb_002233_150 0.0906455321 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
15 Hb_001377_290 0.0907966176 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
16 Hb_000926_280 0.0914055585 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
17 Hb_004491_010 0.0917807093 - - 60S ribosomal protein L51, putative [Ricinus communis]
18 Hb_003392_040 0.0929518038 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
19 Hb_009838_090 0.0939494292 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
20 Hb_000421_070 0.0942849909 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000061_370 Hb_000061_370 Hb_015746_010 Hb_015746_010 Hb_000061_370--Hb_015746_010 Hb_001677_210 Hb_001677_210 Hb_000061_370--Hb_001677_210 Hb_002043_190 Hb_002043_190 Hb_000061_370--Hb_002043_190 Hb_001404_100 Hb_001404_100 Hb_000061_370--Hb_001404_100 Hb_000327_120 Hb_000327_120 Hb_000061_370--Hb_000327_120 Hb_006502_070 Hb_006502_070 Hb_000061_370--Hb_006502_070 Hb_015746_010--Hb_002043_190 Hb_015746_010--Hb_000327_120 Hb_004048_070 Hb_004048_070 Hb_015746_010--Hb_004048_070 Hb_000853_170 Hb_000853_170 Hb_015746_010--Hb_000853_170 Hb_001571_040 Hb_001571_040 Hb_015746_010--Hb_001571_040 Hb_000808_270 Hb_000808_270 Hb_001677_210--Hb_000808_270 Hb_003766_040 Hb_003766_040 Hb_001677_210--Hb_003766_040 Hb_000629_010 Hb_000629_010 Hb_001677_210--Hb_000629_010 Hb_006185_050 Hb_006185_050 Hb_001677_210--Hb_006185_050 Hb_008803_090 Hb_008803_090 Hb_001677_210--Hb_008803_090 Hb_000926_280 Hb_000926_280 Hb_001677_210--Hb_000926_280 Hb_005993_040 Hb_005993_040 Hb_002043_190--Hb_005993_040 Hb_002081_130 Hb_002081_130 Hb_002043_190--Hb_002081_130 Hb_003126_050 Hb_003126_050 Hb_002043_190--Hb_003126_050 Hb_002233_150 Hb_002233_150 Hb_002043_190--Hb_002233_150 Hb_000041_270 Hb_000041_270 Hb_002043_190--Hb_000041_270 Hb_010661_030 Hb_010661_030 Hb_001404_100--Hb_010661_030 Hb_001404_100--Hb_005993_040 Hb_000771_120 Hb_000771_120 Hb_001404_100--Hb_000771_120 Hb_001404_100--Hb_002233_150 Hb_001404_100--Hb_002043_190 Hb_004491_010 Hb_004491_010 Hb_001404_100--Hb_004491_010 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_000327_120--Hb_006185_050 Hb_166236_010 Hb_166236_010 Hb_006502_070--Hb_166236_010 Hb_006502_070--Hb_004491_010 Hb_006502_070--Hb_000041_270 Hb_009411_050 Hb_009411_050 Hb_006502_070--Hb_009411_050 Hb_010417_080 Hb_010417_080 Hb_006502_070--Hb_010417_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.9228 10.1599 12.3409 8.5914 21.339 20.5775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7935 18.9412 17.1697 16.904 2.77739

CAGE analysis