Hb_000061_410

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig61: 349801-353844
Sequence    

Annotation

kegg
ID rcu:RCOM_1118640
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012091750.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067JM58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21556 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_410 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_001252_160 0.0968110751 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
3 Hb_000155_070 0.1232564032 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
4 Hb_003627_020 0.1291447642 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
5 Hb_003507_020 0.1325851594 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
6 Hb_064201_010 0.1374192411 - - hypothetical protein RCOM_1685970 [Ricinus communis]
7 Hb_029464_010 0.1424215646 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
8 Hb_003073_130 0.1431508878 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
9 Hb_003656_030 0.1445124368 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
10 Hb_000914_060 0.1445989689 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
11 Hb_000329_620 0.1468900182 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
12 Hb_000603_200 0.1475902302 - - PREDICTED: myosin-15 [Jatropha curcas]
13 Hb_043637_010 0.1492676066 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
14 Hb_000329_610 0.1554472713 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009193_130 0.1555832442 - - hypothetical protein RCOM_1620550 [Ricinus communis]
16 Hb_000086_220 0.1557161576 - - -
17 Hb_003786_110 0.1566983603 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
18 Hb_001846_080 0.1602844577 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
19 Hb_001628_110 0.1608574839 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
20 Hb_002835_190 0.1613095293 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000061_410 Hb_000061_410 Hb_001252_160 Hb_001252_160 Hb_000061_410--Hb_001252_160 Hb_000155_070 Hb_000155_070 Hb_000061_410--Hb_000155_070 Hb_003627_020 Hb_003627_020 Hb_000061_410--Hb_003627_020 Hb_003507_020 Hb_003507_020 Hb_000061_410--Hb_003507_020 Hb_064201_010 Hb_064201_010 Hb_000061_410--Hb_064201_010 Hb_029464_010 Hb_029464_010 Hb_000061_410--Hb_029464_010 Hb_000603_200 Hb_000603_200 Hb_001252_160--Hb_000603_200 Hb_001252_160--Hb_003507_020 Hb_002835_190 Hb_002835_190 Hb_001252_160--Hb_002835_190 Hb_000329_620 Hb_000329_620 Hb_001252_160--Hb_000329_620 Hb_001252_160--Hb_003627_020 Hb_000914_060 Hb_000914_060 Hb_000155_070--Hb_000914_060 Hb_002301_020 Hb_002301_020 Hb_000155_070--Hb_002301_020 Hb_003327_060 Hb_003327_060 Hb_000155_070--Hb_003327_060 Hb_000155_070--Hb_003627_020 Hb_000907_100 Hb_000907_100 Hb_000155_070--Hb_000907_100 Hb_004126_010 Hb_004126_010 Hb_000155_070--Hb_004126_010 Hb_003627_020--Hb_004126_010 Hb_003627_020--Hb_003507_020 Hb_003656_030 Hb_003656_030 Hb_003627_020--Hb_003656_030 Hb_007178_010 Hb_007178_010 Hb_003627_020--Hb_007178_010 Hb_005488_070 Hb_005488_070 Hb_003627_020--Hb_005488_070 Hb_009510_030 Hb_009510_030 Hb_003627_020--Hb_009510_030 Hb_043637_010 Hb_043637_010 Hb_003507_020--Hb_043637_010 Hb_003507_020--Hb_000603_200 Hb_000853_370 Hb_000853_370 Hb_003507_020--Hb_000853_370 Hb_007810_040 Hb_007810_040 Hb_003507_020--Hb_007810_040 Hb_001146_070 Hb_001146_070 Hb_064201_010--Hb_001146_070 Hb_005271_030 Hb_005271_030 Hb_064201_010--Hb_005271_030 Hb_064201_010--Hb_000329_620 Hb_003376_170 Hb_003376_170 Hb_064201_010--Hb_003376_170 Hb_000352_130 Hb_000352_130 Hb_064201_010--Hb_000352_130 Hb_007158_030 Hb_007158_030 Hb_029464_010--Hb_007158_030 Hb_009193_130 Hb_009193_130 Hb_029464_010--Hb_009193_130 Hb_029464_010--Hb_005271_030 Hb_029464_010--Hb_000329_620 Hb_029464_010--Hb_001146_070 Hb_000856_100 Hb_000856_100 Hb_029464_010--Hb_000856_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34832 0.0191898 0.00345141 0.0260139 4.02447 4.6253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59713 1.34013 1.31127 0.062634 0.017843

CAGE analysis