Hb_000061_420

Information

Type -
Description -
Location Contig61: 356143-356937
Sequence    

Annotation

kegg
ID rcu:RCOM_1470720
description ubiquitin-protein ligase, putative
nr
ID XP_012080331.1
description PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11681 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase keg-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50949: 355129-357318
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_420 0.0 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
2 Hb_003680_200 0.05369894 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
3 Hb_018790_060 0.0678468734 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
4 Hb_000224_170 0.0738951823 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
5 Hb_000291_110 0.0794782474 - - eukaryotic translation initiation factor [Hevea brasiliensis]
6 Hb_000926_330 0.0837528358 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
7 Hb_181235_010 0.0882516908 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
8 Hb_000510_320 0.0923262791 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
9 Hb_000676_110 0.0949149904 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
10 Hb_004976_030 0.0955366969 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
11 Hb_002154_030 0.0983445389 - - RNA binding protein, putative [Ricinus communis]
12 Hb_000207_250 0.0984562119 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
13 Hb_001123_230 0.0988200226 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
14 Hb_002631_060 0.0989539614 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
15 Hb_004907_110 0.100885385 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
16 Hb_000696_040 0.1020757612 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_000200_050 0.102179717 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_031527_040 0.102226845 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
19 Hb_089032_040 0.1030937218 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
20 Hb_003777_330 0.1031071065 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000061_420 Hb_000061_420 Hb_003680_200 Hb_003680_200 Hb_000061_420--Hb_003680_200 Hb_018790_060 Hb_018790_060 Hb_000061_420--Hb_018790_060 Hb_000224_170 Hb_000224_170 Hb_000061_420--Hb_000224_170 Hb_000291_110 Hb_000291_110 Hb_000061_420--Hb_000291_110 Hb_000926_330 Hb_000926_330 Hb_000061_420--Hb_000926_330 Hb_181235_010 Hb_181235_010 Hb_000061_420--Hb_181235_010 Hb_003680_200--Hb_018790_060 Hb_003680_200--Hb_000224_170 Hb_000510_320 Hb_000510_320 Hb_003680_200--Hb_000510_320 Hb_000696_040 Hb_000696_040 Hb_003680_200--Hb_000696_040 Hb_004976_030 Hb_004976_030 Hb_003680_200--Hb_004976_030 Hb_022216_020 Hb_022216_020 Hb_018790_060--Hb_022216_020 Hb_000009_160 Hb_000009_160 Hb_018790_060--Hb_000009_160 Hb_001123_230 Hb_001123_230 Hb_018790_060--Hb_001123_230 Hb_018790_060--Hb_000224_170 Hb_005147_090 Hb_005147_090 Hb_018790_060--Hb_005147_090 Hb_001623_420 Hb_001623_420 Hb_000224_170--Hb_001623_420 Hb_031527_040 Hb_031527_040 Hb_000224_170--Hb_031527_040 Hb_000224_170--Hb_000926_330 Hb_000224_170--Hb_181235_010 Hb_003777_330 Hb_003777_330 Hb_000224_170--Hb_003777_330 Hb_000062_240 Hb_000062_240 Hb_000291_110--Hb_000062_240 Hb_001789_090 Hb_001789_090 Hb_000291_110--Hb_001789_090 Hb_000291_110--Hb_181235_010 Hb_004837_040 Hb_004837_040 Hb_000291_110--Hb_004837_040 Hb_003750_080 Hb_003750_080 Hb_000291_110--Hb_003750_080 Hb_003376_350 Hb_003376_350 Hb_000926_330--Hb_003376_350 Hb_000926_330--Hb_031527_040 Hb_004907_110 Hb_004907_110 Hb_000926_330--Hb_004907_110 Hb_000181_070 Hb_000181_070 Hb_000926_330--Hb_000181_070 Hb_002154_030 Hb_002154_030 Hb_181235_010--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_181235_010--Hb_002477_030 Hb_181235_010--Hb_003777_330 Hb_181235_010--Hb_000062_240 Hb_000032_290 Hb_000032_290 Hb_181235_010--Hb_000032_290 Hb_000406_220 Hb_000406_220 Hb_181235_010--Hb_000406_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.37658 6.42051 2.50838 5.50533 11.8107 8.91725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.16608 10.8085 13.3492 5.52396 2.14685

CAGE analysis