Hb_000061_460

Information

Type transcription factor
Description TF Family: SNF2
Location Contig61: 382399-399616
Sequence    

Annotation

kegg
ID rcu:RCOM_1470570
description ATP binding protein, putative (EC:2.7.11.1)
nr
ID XP_002514699.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID B2ZFP3
description SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Danio rerio GN=smarcal1 PE=2 SV=1
trembl
ID B9RLT0
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1470570 PE=4 SV=1
Gene Ontology
ID GO:0005524
description dna annealing helicase and endonuclease zranb3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50956: 382538-383582 , PASA_asmbl_50957: 384176-393774 , PASA_asmbl_50958: 396183-396857 , PASA_asmbl_50959: 397592-423140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_460 0.0 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
2 Hb_000280_080 0.0582431073 - - hypothetical protein JCGZ_13377 [Jatropha curcas]
3 Hb_003058_190 0.0646681825 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
4 Hb_005731_130 0.067992677 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
5 Hb_000260_270 0.0740915606 - - zinc finger protein, putative [Ricinus communis]
6 Hb_089032_040 0.0751476899 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
7 Hb_004994_220 0.0773807508 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
8 Hb_000395_190 0.0785744851 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
9 Hb_004907_110 0.0807635885 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
10 Hb_000291_110 0.081132071 - - eukaryotic translation initiation factor [Hevea brasiliensis]
11 Hb_000676_110 0.0848593921 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
12 Hb_001143_160 0.085207351 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
13 Hb_010128_080 0.085283165 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
14 Hb_010931_120 0.0853735222 - - myosin heavy chain-related family protein [Populus trichocarpa]
15 Hb_006615_020 0.0869384943 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
16 Hb_000123_210 0.0879183548 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
17 Hb_002016_110 0.0882785622 - - transducin family protein [Populus trichocarpa]
18 Hb_000011_200 0.0883709573 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
19 Hb_002631_060 0.0886684674 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
20 Hb_006938_080 0.0900847799 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000061_460 Hb_000061_460 Hb_000280_080 Hb_000280_080 Hb_000061_460--Hb_000280_080 Hb_003058_190 Hb_003058_190 Hb_000061_460--Hb_003058_190 Hb_005731_130 Hb_005731_130 Hb_000061_460--Hb_005731_130 Hb_000260_270 Hb_000260_270 Hb_000061_460--Hb_000260_270 Hb_089032_040 Hb_089032_040 Hb_000061_460--Hb_089032_040 Hb_004994_220 Hb_004994_220 Hb_000061_460--Hb_004994_220 Hb_003976_030 Hb_003976_030 Hb_000280_080--Hb_003976_030 Hb_001892_020 Hb_001892_020 Hb_000280_080--Hb_001892_020 Hb_000009_320 Hb_000009_320 Hb_000280_080--Hb_000009_320 Hb_000049_310 Hb_000049_310 Hb_000280_080--Hb_000049_310 Hb_004907_110 Hb_004907_110 Hb_000280_080--Hb_004907_110 Hb_000016_250 Hb_000016_250 Hb_003058_190--Hb_000016_250 Hb_011671_430 Hb_011671_430 Hb_003058_190--Hb_011671_430 Hb_000030_300 Hb_000030_300 Hb_003058_190--Hb_000030_300 Hb_031527_040 Hb_031527_040 Hb_003058_190--Hb_031527_040 Hb_000096_070 Hb_000096_070 Hb_003058_190--Hb_000096_070 Hb_000395_190 Hb_000395_190 Hb_005731_130--Hb_000395_190 Hb_005731_130--Hb_000260_270 Hb_010128_080 Hb_010128_080 Hb_005731_130--Hb_010128_080 Hb_005731_130--Hb_089032_040 Hb_001143_160 Hb_001143_160 Hb_005731_130--Hb_001143_160 Hb_000260_270--Hb_000395_190 Hb_011218_040 Hb_011218_040 Hb_000260_270--Hb_011218_040 Hb_000260_270--Hb_004994_220 Hb_000329_470 Hb_000329_470 Hb_000260_270--Hb_000329_470 Hb_002631_060 Hb_002631_060 Hb_000260_270--Hb_002631_060 Hb_089032_040--Hb_000395_190 Hb_002217_300 Hb_002217_300 Hb_089032_040--Hb_002217_300 Hb_089032_040--Hb_010128_080 Hb_000676_110 Hb_000676_110 Hb_089032_040--Hb_000676_110 Hb_002740_110 Hb_002740_110 Hb_004994_220--Hb_002740_110 Hb_001341_170 Hb_001341_170 Hb_004994_220--Hb_001341_170 Hb_010174_110 Hb_010174_110 Hb_004994_220--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_004994_220--Hb_000028_280 Hb_000890_210 Hb_000890_210 Hb_004994_220--Hb_000890_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70479 1.66328 0.887593 1.51327 2.25992 2.03237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.46682 1.70063 2.9766 2.09669 0.858514

CAGE analysis