Hb_000061_470

Information

Type -
Description -
Location Contig61: 418794-430104
Sequence    

Annotation

kegg
ID pop:POPTR_0012s06860g
description POPTRDRAFT_569943; hypothetical protein
nr
ID XP_012080339.1
description PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11685 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna annealing helicase and endonuclease zranb3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50959: 397592-423140 , PASA_asmbl_50960: 423333-425901 , PASA_asmbl_50961: 427777-428835 , PASA_asmbl_50962: 428874-429103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_470 0.0 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
2 Hb_004586_140 0.0732995268 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
3 Hb_005137_050 0.078690018 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
4 Hb_000407_040 0.0894686409 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
5 Hb_000179_070 0.0910575305 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
6 Hb_000878_070 0.0921618621 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
7 Hb_002950_100 0.0942731233 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
8 Hb_002675_260 0.0946613015 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
9 Hb_000308_030 0.0947741612 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
10 Hb_000576_020 0.0956698661 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
11 Hb_001247_130 0.0959147232 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
12 Hb_152175_010 0.0967214348 - - Protein grpE, putative [Ricinus communis]
13 Hb_000302_270 0.0984393421 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
14 Hb_000185_070 0.098689529 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012389_020 0.102465169 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
16 Hb_073973_130 0.1026821482 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
17 Hb_007982_080 0.1032550499 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
18 Hb_002078_220 0.1037741969 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
19 Hb_000886_050 0.1048841325 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
20 Hb_000256_190 0.10492543 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000061_470 Hb_000061_470 Hb_004586_140 Hb_004586_140 Hb_000061_470--Hb_004586_140 Hb_005137_050 Hb_005137_050 Hb_000061_470--Hb_005137_050 Hb_000407_040 Hb_000407_040 Hb_000061_470--Hb_000407_040 Hb_000179_070 Hb_000179_070 Hb_000061_470--Hb_000179_070 Hb_000878_070 Hb_000878_070 Hb_000061_470--Hb_000878_070 Hb_002950_100 Hb_002950_100 Hb_000061_470--Hb_002950_100 Hb_004586_140--Hb_000179_070 Hb_012389_020 Hb_012389_020 Hb_004586_140--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_004586_140--Hb_000302_270 Hb_000308_030 Hb_000308_030 Hb_004586_140--Hb_000308_030 Hb_000521_320 Hb_000521_320 Hb_004586_140--Hb_000521_320 Hb_152175_010 Hb_152175_010 Hb_005137_050--Hb_152175_010 Hb_001247_130 Hb_001247_130 Hb_005137_050--Hb_001247_130 Hb_002411_030 Hb_002411_030 Hb_005137_050--Hb_002411_030 Hb_032208_040 Hb_032208_040 Hb_005137_050--Hb_032208_040 Hb_000130_240 Hb_000130_240 Hb_005137_050--Hb_000130_240 Hb_002681_060 Hb_002681_060 Hb_000407_040--Hb_002681_060 Hb_000010_240 Hb_000010_240 Hb_000407_040--Hb_000010_240 Hb_000059_340 Hb_000059_340 Hb_000407_040--Hb_000059_340 Hb_001477_070 Hb_001477_070 Hb_000407_040--Hb_001477_070 Hb_008103_110 Hb_008103_110 Hb_000407_040--Hb_008103_110 Hb_006816_350 Hb_006816_350 Hb_000179_070--Hb_006816_350 Hb_003020_270 Hb_003020_270 Hb_000179_070--Hb_003020_270 Hb_000661_290 Hb_000661_290 Hb_000179_070--Hb_000661_290 Hb_095296_010 Hb_095296_010 Hb_000179_070--Hb_095296_010 Hb_000696_090 Hb_000696_090 Hb_000179_070--Hb_000696_090 Hb_000886_050 Hb_000886_050 Hb_000878_070--Hb_000886_050 Hb_000649_110 Hb_000649_110 Hb_000878_070--Hb_000649_110 Hb_000878_070--Hb_004586_140 Hb_000878_070--Hb_008103_110 Hb_004586_300 Hb_004586_300 Hb_000878_070--Hb_004586_300 Hb_002950_100--Hb_000521_320 Hb_002950_100--Hb_000302_270 Hb_000010_400 Hb_000010_400 Hb_002950_100--Hb_000010_400 Hb_007813_040 Hb_007813_040 Hb_002950_100--Hb_007813_040 Hb_000031_060 Hb_000031_060 Hb_002950_100--Hb_000031_060 Hb_008246_040 Hb_008246_040 Hb_002950_100--Hb_008246_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.30921 6.46099 6.27842 3.65381 5.72361 3.84146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.84399 5.17947 4.21785 3.60323 1.15717

CAGE analysis