Hb_000061_490

Information

Type -
Description -
Location Contig61: 433966-436663
Sequence    

Annotation

kegg
ID mdm:103455395
description uncharacterized LOC103455395
nr
ID KDO54573.1
description hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID W5C947
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50965: 433722-434722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_490 0.0 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
2 Hb_000264_080 0.0734796301 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
3 Hb_007894_130 0.0746541407 - - hypothetical protein RCOM_0584960 [Ricinus communis]
4 Hb_004371_010 0.0815285125 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
5 Hb_004410_070 0.0817268348 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
6 Hb_009780_100 0.0819155261 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
7 Hb_009771_100 0.0820696925 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
8 Hb_093084_070 0.0835597945 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
9 Hb_003117_020 0.0837881803 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
10 Hb_000236_220 0.0839104637 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
11 Hb_003373_040 0.0853395292 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
12 Hb_001141_370 0.0910203147 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
13 Hb_000780_170 0.0971401585 - - PREDICTED: OBERON-like protein [Jatropha curcas]
14 Hb_000768_180 0.0973719386 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
15 Hb_018301_010 0.0976933687 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
16 Hb_000034_160 0.0981075926 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
17 Hb_005542_050 0.0982624567 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
18 Hb_000556_170 0.0984817138 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
19 Hb_006683_040 0.0985993564 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_000120_420 0.1004137504 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000061_490 Hb_000061_490 Hb_000264_080 Hb_000264_080 Hb_000061_490--Hb_000264_080 Hb_007894_130 Hb_007894_130 Hb_000061_490--Hb_007894_130 Hb_004371_010 Hb_004371_010 Hb_000061_490--Hb_004371_010 Hb_004410_070 Hb_004410_070 Hb_000061_490--Hb_004410_070 Hb_009780_100 Hb_009780_100 Hb_000061_490--Hb_009780_100 Hb_009771_100 Hb_009771_100 Hb_000061_490--Hb_009771_100 Hb_000926_010 Hb_000926_010 Hb_000264_080--Hb_000926_010 Hb_000227_310 Hb_000227_310 Hb_000264_080--Hb_000227_310 Hb_000264_080--Hb_004410_070 Hb_000336_110 Hb_000336_110 Hb_000264_080--Hb_000336_110 Hb_007017_070 Hb_007017_070 Hb_000264_080--Hb_007017_070 Hb_001055_030 Hb_001055_030 Hb_007894_130--Hb_001055_030 Hb_000780_170 Hb_000780_170 Hb_007894_130--Hb_000780_170 Hb_005260_010 Hb_005260_010 Hb_007894_130--Hb_005260_010 Hb_000768_180 Hb_000768_180 Hb_007894_130--Hb_000768_180 Hb_000236_220 Hb_000236_220 Hb_007894_130--Hb_000236_220 Hb_000094_320 Hb_000094_320 Hb_004371_010--Hb_000094_320 Hb_004371_010--Hb_000768_180 Hb_144744_010 Hb_144744_010 Hb_004371_010--Hb_144744_010 Hb_000347_120 Hb_000347_120 Hb_004371_010--Hb_000347_120 Hb_000735_160 Hb_000735_160 Hb_004371_010--Hb_000735_160 Hb_004410_070--Hb_007017_070 Hb_000723_110 Hb_000723_110 Hb_004410_070--Hb_000723_110 Hb_002542_130 Hb_002542_130 Hb_004410_070--Hb_002542_130 Hb_000700_060 Hb_000700_060 Hb_004410_070--Hb_000700_060 Hb_010417_070 Hb_010417_070 Hb_004410_070--Hb_010417_070 Hb_000069_130 Hb_000069_130 Hb_004410_070--Hb_000069_130 Hb_001243_060 Hb_001243_060 Hb_009780_100--Hb_001243_060 Hb_009780_100--Hb_009771_100 Hb_003633_070 Hb_003633_070 Hb_009780_100--Hb_003633_070 Hb_006615_120 Hb_006615_120 Hb_009780_100--Hb_006615_120 Hb_003117_020 Hb_003117_020 Hb_009780_100--Hb_003117_020 Hb_000230_430 Hb_000230_430 Hb_009780_100--Hb_000230_430 Hb_031711_010 Hb_031711_010 Hb_009771_100--Hb_031711_010 Hb_011909_060 Hb_011909_060 Hb_009771_100--Hb_011909_060 Hb_001141_370 Hb_001141_370 Hb_009771_100--Hb_001141_370 Hb_000457_050 Hb_000457_050 Hb_009771_100--Hb_000457_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.337 27.6112 9.83428 8.49645 9.99147 12.836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.00202 7.45745 5.42033 9.10558 4.87265

CAGE analysis