Hb_000061_510

Information

Type -
Description -
Location Contig61: 441236-446812
Sequence    

Annotation

kegg
ID rcu:RCOM_1470550
description hypothetical protein
nr
ID KDP31310.1
description hypothetical protein JCGZ_11686 [Jatropha curcas]
swissprot
ID Q9BY12
description S phase cyclin A-associated protein in the endoplasmic reticulum OS=Homo sapiens GN=SCAPER PE=1 SV=2
trembl
ID A0A067KGD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11686 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50966: 441377-443687 , PASA_asmbl_50968: 444189-445495 , PASA_asmbl_50969: 446194-446358 , PASA_asmbl_50970: 446592-447043 , PASA_asmbl_50971: 446431-447939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_510 0.0 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
2 Hb_002095_070 0.0861307042 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
3 Hb_000189_100 0.0868366253 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
4 Hb_001027_010 0.0944528161 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0019s03720g [Populus trichocarpa]
5 Hb_000206_040 0.0960113042 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
6 Hb_003211_040 0.09873335 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
7 Hb_000836_020 0.1015641075 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
8 Hb_003284_030 0.1018892903 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
9 Hb_006663_040 0.1022471679 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
10 Hb_000162_020 0.1055593147 - - protein translocase, putative [Ricinus communis]
11 Hb_005656_040 0.1070763748 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_000406_020 0.1087504607 - - -
13 Hb_018133_050 0.1091299805 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
14 Hb_005539_090 0.1095196701 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
15 Hb_000083_270 0.1098380342 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
16 Hb_001821_090 0.1108106965 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
17 Hb_000069_410 0.1124509967 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
18 Hb_011947_050 0.1137392735 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
19 Hb_174865_020 0.1138457929 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
20 Hb_000949_010 0.1144675193 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]

Gene co-expression network

sample Hb_000061_510 Hb_000061_510 Hb_002095_070 Hb_002095_070 Hb_000061_510--Hb_002095_070 Hb_000189_100 Hb_000189_100 Hb_000061_510--Hb_000189_100 Hb_001027_010 Hb_001027_010 Hb_000061_510--Hb_001027_010 Hb_000206_040 Hb_000206_040 Hb_000061_510--Hb_000206_040 Hb_003211_040 Hb_003211_040 Hb_000061_510--Hb_003211_040 Hb_000836_020 Hb_000836_020 Hb_000061_510--Hb_000836_020 Hb_000261_150 Hb_000261_150 Hb_002095_070--Hb_000261_150 Hb_002095_070--Hb_003211_040 Hb_000083_070 Hb_000083_070 Hb_002095_070--Hb_000083_070 Hb_002095_070--Hb_000836_020 Hb_003805_050 Hb_003805_050 Hb_002095_070--Hb_003805_050 Hb_001085_030 Hb_001085_030 Hb_002095_070--Hb_001085_030 Hb_006663_040 Hb_006663_040 Hb_000189_100--Hb_006663_040 Hb_000327_280 Hb_000327_280 Hb_000189_100--Hb_000327_280 Hb_018133_050 Hb_018133_050 Hb_000189_100--Hb_018133_050 Hb_000832_320 Hb_000832_320 Hb_000189_100--Hb_000832_320 Hb_052764_060 Hb_052764_060 Hb_000189_100--Hb_052764_060 Hb_001027_010--Hb_002095_070 Hb_001027_010--Hb_003211_040 Hb_000015_050 Hb_000015_050 Hb_001027_010--Hb_000015_050 Hb_174865_020 Hb_174865_020 Hb_001027_010--Hb_174865_020 Hb_000189_110 Hb_000189_110 Hb_001027_010--Hb_000189_110 Hb_008494_010 Hb_008494_010 Hb_000206_040--Hb_008494_010 Hb_005656_040 Hb_005656_040 Hb_000206_040--Hb_005656_040 Hb_001913_060 Hb_001913_060 Hb_000206_040--Hb_001913_060 Hb_001821_090 Hb_001821_090 Hb_000206_040--Hb_001821_090 Hb_002784_110 Hb_002784_110 Hb_000206_040--Hb_002784_110 Hb_002311_100 Hb_002311_100 Hb_000206_040--Hb_002311_100 Hb_007576_210 Hb_007576_210 Hb_003211_040--Hb_007576_210 Hb_011947_050 Hb_011947_050 Hb_003211_040--Hb_011947_050 Hb_003119_080 Hb_003119_080 Hb_003211_040--Hb_003119_080 Hb_002909_120 Hb_002909_120 Hb_003211_040--Hb_002909_120 Hb_009486_170 Hb_009486_170 Hb_003211_040--Hb_009486_170 Hb_003581_170 Hb_003581_170 Hb_000836_020--Hb_003581_170 Hb_011242_060 Hb_011242_060 Hb_000836_020--Hb_011242_060 Hb_001699_280 Hb_001699_280 Hb_000836_020--Hb_001699_280 Hb_000265_090 Hb_000265_090 Hb_000836_020--Hb_000265_090 Hb_000703_130 Hb_000703_130 Hb_000836_020--Hb_000703_130 Hb_188063_010 Hb_188063_010 Hb_000836_020--Hb_188063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.56302 9.67457 1.81857 1.84884 4.29485 6.12863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77011 1.11619 3.68518 6.64334 4.93395

CAGE analysis