Hb_000062_030

Information

Type -
Description -
Location Contig62: 13763-18997
Sequence    

Annotation

kegg
ID rcu:RCOM_1082550
description protein with unknown function (EC:2.7.10.2)
nr
ID XP_012085571.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
swissprot
ID C0LGI2
description Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1
trembl
ID B9RMQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1082550 PE=3 SV=1
Gene Ontology
ID GO:0004672
description leucine-rich repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51395: 14096-16767 , PASA_asmbl_51396: 15926-16604 , PASA_asmbl_51397: 16207-16615 , PASA_asmbl_51398: 17249-18371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_030 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
2 Hb_000505_110 0.0992470104 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
3 Hb_000366_190 0.1485192877 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
4 Hb_008147_050 0.1492356501 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
5 Hb_001031_040 0.1579019421 - - conserved hypothetical protein [Ricinus communis]
6 Hb_013818_030 0.1581046588 - - conserved hypothetical protein [Ricinus communis]
7 Hb_186857_010 0.1632398689 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
8 Hb_011164_010 0.1677349459 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
9 Hb_003894_040 0.1699291393 - - nucleotide binding protein, putative [Ricinus communis]
10 Hb_001051_090 0.1741998324 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
11 Hb_000599_170 0.1748623405 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
12 Hb_000422_110 0.1768952272 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
13 Hb_003001_040 0.1769306503 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
14 Hb_002039_050 0.1819826861 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
15 Hb_001301_090 0.1830094846 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005843_160 0.1838759798 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
17 Hb_132840_100 0.1844644781 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
18 Hb_001882_110 0.1878969753 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
19 Hb_002965_030 0.1884627433 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
20 Hb_001004_120 0.1885165622 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_030 Hb_000062_030 Hb_000505_110 Hb_000505_110 Hb_000062_030--Hb_000505_110 Hb_000366_190 Hb_000366_190 Hb_000062_030--Hb_000366_190 Hb_008147_050 Hb_008147_050 Hb_000062_030--Hb_008147_050 Hb_001031_040 Hb_001031_040 Hb_000062_030--Hb_001031_040 Hb_013818_030 Hb_013818_030 Hb_000062_030--Hb_013818_030 Hb_186857_010 Hb_186857_010 Hb_000062_030--Hb_186857_010 Hb_000599_170 Hb_000599_170 Hb_000505_110--Hb_000599_170 Hb_000505_110--Hb_008147_050 Hb_001051_090 Hb_001051_090 Hb_000505_110--Hb_001051_090 Hb_004884_030 Hb_004884_030 Hb_000505_110--Hb_004884_030 Hb_000505_110--Hb_013818_030 Hb_009119_030 Hb_009119_030 Hb_000366_190--Hb_009119_030 Hb_020805_010 Hb_020805_010 Hb_000366_190--Hb_020805_010 Hb_009485_020 Hb_009485_020 Hb_000366_190--Hb_009485_020 Hb_002320_070 Hb_002320_070 Hb_000366_190--Hb_002320_070 Hb_000749_110 Hb_000749_110 Hb_000366_190--Hb_000749_110 Hb_011164_010 Hb_011164_010 Hb_008147_050--Hb_011164_010 Hb_027380_230 Hb_027380_230 Hb_008147_050--Hb_027380_230 Hb_000206_120 Hb_000206_120 Hb_008147_050--Hb_000206_120 Hb_008147_050--Hb_004884_030 Hb_002044_170 Hb_002044_170 Hb_001031_040--Hb_002044_170 Hb_000197_290 Hb_000197_290 Hb_001031_040--Hb_000197_290 Hb_010417_060 Hb_010417_060 Hb_001031_040--Hb_010417_060 Hb_001301_090 Hb_001301_090 Hb_001031_040--Hb_001301_090 Hb_000286_170 Hb_000286_170 Hb_001031_040--Hb_000286_170 Hb_011671_230 Hb_011671_230 Hb_001031_040--Hb_011671_230 Hb_032920_130 Hb_032920_130 Hb_013818_030--Hb_032920_130 Hb_132840_100 Hb_132840_100 Hb_013818_030--Hb_132840_100 Hb_013818_030--Hb_010417_060 Hb_003097_080 Hb_003097_080 Hb_013818_030--Hb_003097_080 Hb_013818_030--Hb_001301_090 Hb_158604_010 Hb_158604_010 Hb_013818_030--Hb_158604_010 Hb_003001_040 Hb_003001_040 Hb_186857_010--Hb_003001_040 Hb_002092_110 Hb_002092_110 Hb_186857_010--Hb_002092_110 Hb_004355_040 Hb_004355_040 Hb_186857_010--Hb_004355_040 Hb_000010_270 Hb_000010_270 Hb_186857_010--Hb_000010_270 Hb_186857_010--Hb_009485_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0654 21.3233 11.9326 21.0444 34.0359 15.8688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7399 0.7987 1.54992 7.89921 7.04883

CAGE analysis