Hb_000062_110

Information

Type transcription factor
Description TF Family: MYB
Location Contig62: 79743-87325
Sequence    

Annotation

kegg
ID rcu:RCOM_1082490
description heat shock protein, putative
nr
ID KDP26736.1
description hypothetical protein JCGZ_17894 [Jatropha curcas]
swissprot
ID P81394
description Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1
trembl
ID A0A067JS30
description MYB family protein OS=Jatropha curcas GN=JCGZ_17894 PE=4 SV=1
Gene Ontology
ID GO:0003677
description small heat shock chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51409: 83736-84701 , PASA_asmbl_51410: 79774-84722
cDNA
(Sanger)
(ID:Location)		 010_I03.ab1: 83930-84701

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_110 0.0 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
2 Hb_001766_040 0.1370095742 - - chaperone clpb, putative [Ricinus communis]
3 Hb_000941_140 0.1402319305 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
4 Hb_006618_040 0.1424736417 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
5 Hb_001369_370 0.1434847633 - - PREDICTED: 23.6 kDa heat shock protein, mitochondrial [Jatropha curcas]
6 Hb_011344_020 0.1548507398 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
7 Hb_019516_030 0.1599585284 - - Calcyclin-binding protein, putative [Ricinus communis]
8 Hb_000260_560 0.1600509572 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
9 Hb_000334_170 0.1622023361 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
10 Hb_000329_100 0.1637744528 - - PREDICTED: uncharacterized protein LOC105643144 [Jatropha curcas]
11 Hb_000958_070 0.1646573386 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
12 Hb_000454_190 0.1648133118 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
13 Hb_010407_190 0.1656340548 - - phosphate transporter [Manihot esculenta]
14 Hb_000011_210 0.1697663042 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
15 Hb_000264_230 0.1707346026 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
16 Hb_006052_030 0.1710360915 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
17 Hb_001232_100 0.1720689316 - - Heat shock 70 kDa protein, putative [Ricinus communis]
18 Hb_000343_110 0.1734738075 - - Heat shock 70 kDa protein, putative [Ricinus communis]
19 Hb_011931_060 0.174874415 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
20 Hb_002636_110 0.1749501244 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_000062_110 Hb_000062_110 Hb_001766_040 Hb_001766_040 Hb_000062_110--Hb_001766_040 Hb_000941_140 Hb_000941_140 Hb_000062_110--Hb_000941_140 Hb_006618_040 Hb_006618_040 Hb_000062_110--Hb_006618_040 Hb_001369_370 Hb_001369_370 Hb_000062_110--Hb_001369_370 Hb_011344_020 Hb_011344_020 Hb_000062_110--Hb_011344_020 Hb_019516_030 Hb_019516_030 Hb_000062_110--Hb_019516_030 Hb_001366_160 Hb_001366_160 Hb_001766_040--Hb_001366_160 Hb_006573_010 Hb_006573_010 Hb_001766_040--Hb_006573_010 Hb_010407_190 Hb_010407_190 Hb_001766_040--Hb_010407_190 Hb_005962_010 Hb_005962_010 Hb_001766_040--Hb_005962_010 Hb_002368_070 Hb_002368_070 Hb_001766_040--Hb_002368_070 Hb_004296_010 Hb_004296_010 Hb_000941_140--Hb_004296_010 Hb_000941_140--Hb_006618_040 Hb_000941_140--Hb_019516_030 Hb_000454_190 Hb_000454_190 Hb_000941_140--Hb_000454_190 Hb_001232_100 Hb_001232_100 Hb_000941_140--Hb_001232_100 Hb_006618_040--Hb_001232_100 Hb_000334_170 Hb_000334_170 Hb_006618_040--Hb_000334_170 Hb_000343_110 Hb_000343_110 Hb_006618_040--Hb_000343_110 Hb_002400_230 Hb_002400_230 Hb_006618_040--Hb_002400_230 Hb_006618_040--Hb_004296_010 Hb_001369_370--Hb_019516_030 Hb_011004_020 Hb_011004_020 Hb_001369_370--Hb_011004_020 Hb_001369_370--Hb_000941_140 Hb_001235_100 Hb_001235_100 Hb_001369_370--Hb_001235_100 Hb_001369_370--Hb_000454_190 Hb_089140_050 Hb_089140_050 Hb_011344_020--Hb_089140_050 Hb_000958_070 Hb_000958_070 Hb_011344_020--Hb_000958_070 Hb_011344_020--Hb_000343_110 Hb_003884_030 Hb_003884_030 Hb_011344_020--Hb_003884_030 Hb_000376_060 Hb_000376_060 Hb_011344_020--Hb_000376_060 Hb_000429_220 Hb_000429_220 Hb_011344_020--Hb_000429_220 Hb_019516_030--Hb_000454_190 Hb_019516_030--Hb_011004_020 Hb_004635_080 Hb_004635_080 Hb_019516_030--Hb_004635_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9382 57.717 19.4208 21.9461 102.956 27.9486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4983 14.4287 14.8854 13.1231 87.2231

CAGE analysis