Hb_000062_140

Information

Type transcription factor
Description TF Family: GRAS
Location Contig62: 112727-117739
Sequence    

Annotation

kegg
ID rcu:RCOM_1082450
description DELLA protein GAI1, putative
nr
ID KDP26739.1
description hypothetical protein JCGZ_17897 [Jatropha curcas]
swissprot
ID Q8S4W7
description DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1
trembl
ID A0A067K4N6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17897 PE=4 SV=1
Gene Ontology
ID GO:0006351
description della protein rgl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51414: 112531-115808
cDNA
(Sanger)
(ID:Location)		 030_O04.ab1: 112941-115808 , 039_B07.ab1: 112923-115759 , 040_E11.ab1: 112914-115806

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_140 0.0 transcription factor TF Family: GRAS hypothetical protein JCGZ_17897 [Jatropha curcas]
2 Hb_003663_060 0.1211485733 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Jatropha curcas]
3 Hb_153533_010 0.1315591069 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
4 Hb_001439_060 0.1454782146 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
5 Hb_011021_020 0.1471547299 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
6 Hb_000861_020 0.1559273029 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
7 Hb_000193_270 0.1612155176 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
8 Hb_002188_120 0.1626949625 - - PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]
9 Hb_006117_040 0.1636679728 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
10 Hb_007922_020 0.1671392913 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
11 Hb_021346_030 0.1673537492 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
12 Hb_012194_050 0.1689882676 - - Aspartyl aminopeptidase, putative [Ricinus communis]
13 Hb_002374_240 0.1691666973 - - nucellin, putative [Ricinus communis]
14 Hb_004994_380 0.1692483884 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
15 Hb_000014_150 0.1704882778 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
16 Hb_000224_160 0.1705304609 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_001489_050 0.1708688997 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
18 Hb_036790_080 0.1709205533 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
19 Hb_000270_290 0.1721548695 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
20 Hb_000200_030 0.172321699 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000062_140 Hb_000062_140 Hb_003663_060 Hb_003663_060 Hb_000062_140--Hb_003663_060 Hb_153533_010 Hb_153533_010 Hb_000062_140--Hb_153533_010 Hb_001439_060 Hb_001439_060 Hb_000062_140--Hb_001439_060 Hb_011021_020 Hb_011021_020 Hb_000062_140--Hb_011021_020 Hb_000861_020 Hb_000861_020 Hb_000062_140--Hb_000861_020 Hb_000193_270 Hb_000193_270 Hb_000062_140--Hb_000193_270 Hb_002681_070 Hb_002681_070 Hb_003663_060--Hb_002681_070 Hb_006915_070 Hb_006915_070 Hb_003663_060--Hb_006915_070 Hb_003663_060--Hb_000861_020 Hb_003663_060--Hb_153533_010 Hb_000631_080 Hb_000631_080 Hb_003663_060--Hb_000631_080 Hb_004994_380 Hb_004994_380 Hb_003663_060--Hb_004994_380 Hb_153533_010--Hb_000193_270 Hb_153533_010--Hb_004994_380 Hb_001951_180 Hb_001951_180 Hb_153533_010--Hb_001951_180 Hb_035755_010 Hb_035755_010 Hb_153533_010--Hb_035755_010 Hb_004218_280 Hb_004218_280 Hb_153533_010--Hb_004218_280 Hb_018133_090 Hb_018133_090 Hb_001439_060--Hb_018133_090 Hb_001439_060--Hb_000861_020 Hb_001491_010 Hb_001491_010 Hb_001439_060--Hb_001491_010 Hb_015941_020 Hb_015941_020 Hb_001439_060--Hb_015941_020 Hb_012760_190 Hb_012760_190 Hb_001439_060--Hb_012760_190 Hb_000337_050 Hb_000337_050 Hb_001439_060--Hb_000337_050 Hb_002496_020 Hb_002496_020 Hb_011021_020--Hb_002496_020 Hb_005847_060 Hb_005847_060 Hb_011021_020--Hb_005847_060 Hb_000959_030 Hb_000959_030 Hb_011021_020--Hb_000959_030 Hb_004191_020 Hb_004191_020 Hb_011021_020--Hb_004191_020 Hb_011021_020--Hb_000193_270 Hb_000224_160 Hb_000224_160 Hb_011021_020--Hb_000224_160 Hb_103118_010 Hb_103118_010 Hb_000861_020--Hb_103118_010 Hb_105123_010 Hb_105123_010 Hb_000861_020--Hb_105123_010 Hb_000861_020--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000861_020--Hb_086639_040 Hb_000061_210 Hb_000061_210 Hb_000861_020--Hb_000061_210 Hb_002154_100 Hb_002154_100 Hb_000861_020--Hb_002154_100 Hb_000599_300 Hb_000599_300 Hb_000193_270--Hb_000599_300 Hb_005078_010 Hb_005078_010 Hb_000193_270--Hb_005078_010 Hb_009117_030 Hb_009117_030 Hb_000193_270--Hb_009117_030 Hb_003633_030 Hb_003633_030 Hb_000193_270--Hb_003633_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.18476 1.00931 2.29083 2.65057 4.95542 10.4834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.42679 4.04277 4.07258 2.16877 10.4548

CAGE analysis