Hb_000062_220

Information

Type -
Description -
Location Contig62: 175319-188524
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06440g
description POPTRDRAFT_1089741; serine/threonine protein phosphatase 2A regulatory subunit B'
nr
ID CDX99733.1
description BnaC02g35870D [Brassica napus]
swissprot
ID Q9LU89
description Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1
trembl
ID A0A0D3AVY9
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 57 kda regulatory subunit b theta isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51421: 175830-180897 , PASA_asmbl_51422: 177694-178851 , PASA_asmbl_51423: 183242-187397 , PASA_asmbl_51425: 187917-188373 , PASA_asmbl_51426: 188459-198648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_220 0.0 - - BnaC02g35870D [Brassica napus]
2 Hb_005779_060 0.053253341 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
3 Hb_000876_070 0.0573598823 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
4 Hb_007416_320 0.0662002236 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012019_010 0.0688575316 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
6 Hb_010422_060 0.069623692 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
7 Hb_008725_260 0.0706195924 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
8 Hb_000016_250 0.0712328309 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
9 Hb_002046_180 0.0720339193 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
10 Hb_075449_010 0.0724173884 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
11 Hb_002739_100 0.0729296829 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
12 Hb_001059_030 0.0733047565 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
13 Hb_008623_020 0.0756984035 - - PREDICTED: uncharacterized protein At3g17611 [Jatropha curcas]
14 Hb_005846_040 0.0786199753 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
15 Hb_004907_110 0.0786916452 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
16 Hb_031527_040 0.0788297553 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
17 Hb_000866_220 0.0788511161 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
18 Hb_001157_040 0.0789273205 - - casein kinase, putative [Ricinus communis]
19 Hb_000696_040 0.0791156975 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_000676_180 0.0794091874 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]

Gene co-expression network

sample Hb_000062_220 Hb_000062_220 Hb_005779_060 Hb_005779_060 Hb_000062_220--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_000062_220--Hb_000876_070 Hb_007416_320 Hb_007416_320 Hb_000062_220--Hb_007416_320 Hb_012019_010 Hb_012019_010 Hb_000062_220--Hb_012019_010 Hb_010422_060 Hb_010422_060 Hb_000062_220--Hb_010422_060 Hb_008725_260 Hb_008725_260 Hb_000062_220--Hb_008725_260 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_002046_180 Hb_002046_180 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150 Hb_000876_070--Hb_002739_100 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_001633_210 Hb_001633_210 Hb_007416_320--Hb_001633_210 Hb_000058_060 Hb_000058_060 Hb_007416_320--Hb_000058_060 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470 Hb_012019_010--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_012019_010--Hb_005463_100 Hb_012019_010--Hb_005779_060 Hb_012019_010--Hb_000876_070 Hb_012019_010--Hb_002110_150 Hb_000614_160 Hb_000614_160 Hb_012019_010--Hb_000614_160 Hb_002830_030 Hb_002830_030 Hb_010422_060--Hb_002830_030 Hb_001059_030 Hb_001059_030 Hb_010422_060--Hb_001059_030 Hb_000504_140 Hb_000504_140 Hb_010422_060--Hb_000504_140 Hb_010422_060--Hb_005779_060 Hb_004254_120 Hb_004254_120 Hb_010422_060--Hb_004254_120 Hb_008725_260--Hb_002110_150 Hb_008725_260--Hb_002046_180 Hb_000866_220 Hb_000866_220 Hb_008725_260--Hb_000866_220 Hb_009178_030 Hb_009178_030 Hb_008725_260--Hb_009178_030 Hb_008725_260--Hb_000876_070 Hb_007532_030 Hb_007532_030 Hb_008725_260--Hb_007532_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.73314 10.9403 7.54743 9.29924 13.7011 11.1919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9539 21.8028 20.4609 9.52663 7.22297

CAGE analysis