Hb_000062_240

Information

Type -
Description -
Location Contig62: 201581-205053
Sequence    

Annotation

kegg
ID rcu:RCOM_1081350
description Signal recognition particle subunit srp72, putative
nr
ID XP_012085604.1
description PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
swissprot
ID O76094
description Signal recognition particle subunit SRP72 OS=Homo sapiens GN=SRP72 PE=1 SV=3
trembl
ID A0A067JVD9
description Signal recognition particle subunit SRP72 OS=Jatropha curcas GN=JCGZ_17906 PE=3 SV=1
Gene Ontology
ID GO:0048500
description signal recognition particle subunit srp72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51430: 202756-205025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_240 0.0 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
2 Hb_004837_040 0.0545194178 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
3 Hb_001789_090 0.0589231645 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
4 Hb_002811_360 0.0616004738 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
5 Hb_000291_110 0.0629769063 - - eukaryotic translation initiation factor [Hevea brasiliensis]
6 Hb_000418_100 0.0659687753 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
7 Hb_015306_020 0.0669871691 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
8 Hb_002030_030 0.0692037844 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
9 Hb_181235_010 0.0692524105 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
10 Hb_002154_030 0.0694036103 - - RNA binding protein, putative [Ricinus communis]
11 Hb_033642_010 0.0698098839 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
12 Hb_028872_140 0.0704719117 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
13 Hb_000803_190 0.0711977319 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
14 Hb_001269_550 0.0716592584 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
15 Hb_019654_190 0.073052105 - - protein kinase, putative [Ricinus communis]
16 Hb_002026_180 0.0730808335 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
17 Hb_001720_050 0.0735240096 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
18 Hb_039946_020 0.0745940486 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002496_030 0.0748867281 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
20 Hb_000207_390 0.0750485944 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_240 Hb_000062_240 Hb_004837_040 Hb_004837_040 Hb_000062_240--Hb_004837_040 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000062_240--Hb_002811_360 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_000418_100 Hb_000418_100 Hb_000062_240--Hb_000418_100 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020 Hb_000000_370 Hb_000000_370 Hb_004837_040--Hb_000000_370 Hb_002496_030 Hb_002496_030 Hb_004837_040--Hb_002496_030 Hb_000203_160 Hb_000203_160 Hb_004837_040--Hb_000203_160 Hb_000629_010 Hb_000629_010 Hb_004837_040--Hb_000629_010 Hb_175338_030 Hb_175338_030 Hb_004837_040--Hb_175338_030 Hb_000802_080 Hb_000802_080 Hb_001789_090--Hb_000802_080 Hb_001789_090--Hb_015306_020 Hb_001789_090--Hb_000291_110 Hb_001789_090--Hb_002811_360 Hb_000406_220 Hb_000406_220 Hb_001789_090--Hb_000406_220 Hb_004724_200 Hb_004724_200 Hb_002811_360--Hb_004724_200 Hb_039837_010 Hb_039837_010 Hb_002811_360--Hb_039837_010 Hb_028872_140 Hb_028872_140 Hb_002811_360--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_002811_360--Hb_001454_210 Hb_001301_200 Hb_001301_200 Hb_002811_360--Hb_001301_200 Hb_181235_010 Hb_181235_010 Hb_000291_110--Hb_181235_010 Hb_000291_110--Hb_004837_040 Hb_003750_080 Hb_003750_080 Hb_000291_110--Hb_003750_080 Hb_000061_420 Hb_000061_420 Hb_000291_110--Hb_000061_420 Hb_001720_050 Hb_001720_050 Hb_000418_100--Hb_001720_050 Hb_001030_120 Hb_001030_120 Hb_000418_100--Hb_001030_120 Hb_182026_020 Hb_182026_020 Hb_000418_100--Hb_182026_020 Hb_082609_020 Hb_082609_020 Hb_000418_100--Hb_082609_020 Hb_002609_110 Hb_002609_110 Hb_000418_100--Hb_002609_110 Hb_015306_020--Hb_001454_210 Hb_002890_340 Hb_002890_340 Hb_015306_020--Hb_002890_340 Hb_015306_020--Hb_028872_140 Hb_009111_050 Hb_009111_050 Hb_015306_020--Hb_009111_050 Hb_004046_010 Hb_004046_010 Hb_015306_020--Hb_004046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2358 11.6522 5.78207 7.47193 18.577 25.8344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8467 14.9744 23.08 13.8299 4.86387

CAGE analysis