Hb_000062_250

Information

Type -
Description -
Location Contig62: 208150-212407
Sequence    

Annotation

kegg
ID rcu:RCOM_1081340
description hypothetical protein
nr
ID XP_012085605.1
description PREDICTED: F-box protein SKIP14 [Jatropha curcas]
swissprot
ID Q9LU91
description F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1
trembl
ID A0A067K4P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17907 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein skip14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51431: 208228-212407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_250 0.0 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
2 Hb_000077_230 0.0647436938 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
3 Hb_001584_150 0.0693067108 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
4 Hb_015807_070 0.0737935418 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
5 Hb_000000_370 0.0766970024 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
6 Hb_007757_110 0.0813996306 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
7 Hb_000077_070 0.0846349935 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
8 Hb_004888_020 0.0859143924 transcription factor TF Family: TCP PREDICTED: transcription factor TCP7-like [Jatropha curcas]
9 Hb_001728_100 0.0868865206 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
10 Hb_000031_050 0.0907292803 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
11 Hb_008500_010 0.0918758589 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
12 Hb_048219_010 0.0939806293 - - coronatine-insensitive 1 [Hevea brasiliensis]
13 Hb_004785_060 0.0941714421 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
14 Hb_004684_010 0.0949577271 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
15 Hb_000953_010 0.0949895906 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
16 Hb_000204_210 0.0951645182 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
17 Hb_000107_500 0.0954668506 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
18 Hb_001930_010 0.096337461 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
19 Hb_001141_390 0.0966814657 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
20 Hb_000181_070 0.0971670919 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000062_250 Hb_000062_250 Hb_000077_230 Hb_000077_230 Hb_000062_250--Hb_000077_230 Hb_001584_150 Hb_001584_150 Hb_000062_250--Hb_001584_150 Hb_015807_070 Hb_015807_070 Hb_000062_250--Hb_015807_070 Hb_000000_370 Hb_000000_370 Hb_000062_250--Hb_000000_370 Hb_007757_110 Hb_007757_110 Hb_000062_250--Hb_007757_110 Hb_000077_070 Hb_000077_070 Hb_000062_250--Hb_000077_070 Hb_000077_230--Hb_000077_070 Hb_000025_360 Hb_000025_360 Hb_000077_230--Hb_000025_360 Hb_000107_500 Hb_000107_500 Hb_000077_230--Hb_000107_500 Hb_000031_050 Hb_000031_050 Hb_000077_230--Hb_000031_050 Hb_000174_220 Hb_000174_220 Hb_000077_230--Hb_000174_220 Hb_008500_010 Hb_008500_010 Hb_001584_150--Hb_008500_010 Hb_001584_150--Hb_007757_110 Hb_000204_210 Hb_000204_210 Hb_001584_150--Hb_000204_210 Hb_001507_020 Hb_001507_020 Hb_001584_150--Hb_001507_020 Hb_002311_040 Hb_002311_040 Hb_001584_150--Hb_002311_040 Hb_015807_070--Hb_000174_220 Hb_001021_170 Hb_001021_170 Hb_015807_070--Hb_001021_170 Hb_007416_180 Hb_007416_180 Hb_015807_070--Hb_007416_180 Hb_004684_010 Hb_004684_010 Hb_015807_070--Hb_004684_010 Hb_015807_070--Hb_008500_010 Hb_011491_010 Hb_011491_010 Hb_015807_070--Hb_011491_010 Hb_004837_040 Hb_004837_040 Hb_000000_370--Hb_004837_040 Hb_004785_060 Hb_004785_060 Hb_000000_370--Hb_004785_060 Hb_000859_060 Hb_000859_060 Hb_000000_370--Hb_000859_060 Hb_000085_100 Hb_000085_100 Hb_000000_370--Hb_000085_100 Hb_012807_050 Hb_012807_050 Hb_000000_370--Hb_012807_050 Hb_010175_020 Hb_010175_020 Hb_007757_110--Hb_010175_020 Hb_002307_100 Hb_002307_100 Hb_007757_110--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_007757_110--Hb_000152_820 Hb_175338_030 Hb_175338_030 Hb_007757_110--Hb_175338_030 Hb_000390_070 Hb_000390_070 Hb_007757_110--Hb_000390_070 Hb_000077_070--Hb_000025_360 Hb_000336_140 Hb_000336_140 Hb_000077_070--Hb_000336_140 Hb_000032_320 Hb_000032_320 Hb_000077_070--Hb_000032_320 Hb_001247_070 Hb_001247_070 Hb_000077_070--Hb_001247_070 Hb_001728_100 Hb_001728_100 Hb_000077_070--Hb_001728_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.9973 36.494 10.7376 15.3886 26.5537 36.9517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6855 14.9707 41.3464 15.037 13.1151

CAGE analysis