Hb_000062_260

Information

Type -
Description -
Location Contig62: 213924-218893
Sequence    

Annotation

kegg
ID rcu:RCOM_1081320
description hypothetical protein
nr
ID XP_012085607.1
description PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17909 PE=4 SV=1
Gene Ontology
ID GO:0003677
description restriction endonuclease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51433: 216649-216993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_260 0.0 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
2 Hb_006816_180 0.0897314038 - - -
3 Hb_002639_140 0.1076617246 - - PREDICTED: 4-coumarate--CoA ligase-like 5 [Jatropha curcas]
4 Hb_001700_010 0.112746882 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
5 Hb_002217_260 0.1142053837 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
6 Hb_009775_010 0.1250456084 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
7 Hb_004398_030 0.1266241456 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
8 Hb_001975_090 0.1268522253 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
9 Hb_000627_250 0.1276115441 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
10 Hb_003952_060 0.1278198872 - - hypothetical protein POPTR_0016s11000g [Populus trichocarpa]
11 Hb_001322_140 0.1283670376 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
12 Hb_000300_670 0.1317743828 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
13 Hb_004970_190 0.1322387423 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_002780_020 0.1336909692 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Jatropha curcas]
15 Hb_005496_050 0.1340497988 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
16 Hb_000080_120 0.1400140508 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
17 Hb_000184_170 0.1413090468 - - hypothetical protein RCOM_1213430 [Ricinus communis]
18 Hb_001492_030 0.1417728527 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Jatropha curcas]
19 Hb_001232_150 0.1419988008 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
20 Hb_003029_070 0.1424379824 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_260 Hb_000062_260 Hb_006816_180 Hb_006816_180 Hb_000062_260--Hb_006816_180 Hb_002639_140 Hb_002639_140 Hb_000062_260--Hb_002639_140 Hb_001700_010 Hb_001700_010 Hb_000062_260--Hb_001700_010 Hb_002217_260 Hb_002217_260 Hb_000062_260--Hb_002217_260 Hb_009775_010 Hb_009775_010 Hb_000062_260--Hb_009775_010 Hb_004398_030 Hb_004398_030 Hb_000062_260--Hb_004398_030 Hb_005496_050 Hb_005496_050 Hb_006816_180--Hb_005496_050 Hb_000358_140 Hb_000358_140 Hb_006816_180--Hb_000358_140 Hb_002027_090 Hb_002027_090 Hb_006816_180--Hb_002027_090 Hb_025557_050 Hb_025557_050 Hb_006816_180--Hb_025557_050 Hb_000300_670 Hb_000300_670 Hb_006816_180--Hb_000300_670 Hb_000080_120 Hb_000080_120 Hb_002639_140--Hb_000080_120 Hb_001322_140 Hb_001322_140 Hb_002639_140--Hb_001322_140 Hb_002780_020 Hb_002780_020 Hb_002639_140--Hb_002780_020 Hb_003794_010 Hb_003794_010 Hb_002639_140--Hb_003794_010 Hb_000627_250 Hb_000627_250 Hb_002639_140--Hb_000627_250 Hb_000103_480 Hb_000103_480 Hb_001700_010--Hb_000103_480 Hb_000184_170 Hb_000184_170 Hb_001700_010--Hb_000184_170 Hb_000869_020 Hb_000869_020 Hb_001700_010--Hb_000869_020 Hb_008165_060 Hb_008165_060 Hb_001700_010--Hb_008165_060 Hb_001700_010--Hb_001322_140 Hb_000205_190 Hb_000205_190 Hb_001700_010--Hb_000205_190 Hb_000462_090 Hb_000462_090 Hb_002217_260--Hb_000462_090 Hb_001584_200 Hb_001584_200 Hb_002217_260--Hb_001584_200 Hb_036790_080 Hb_036790_080 Hb_002217_260--Hb_036790_080 Hb_002217_260--Hb_009775_010 Hb_002217_260--Hb_000080_120 Hb_021346_030 Hb_021346_030 Hb_002217_260--Hb_021346_030 Hb_006538_120 Hb_006538_120 Hb_009775_010--Hb_006538_120 Hb_000221_140 Hb_000221_140 Hb_009775_010--Hb_000221_140 Hb_000580_150 Hb_000580_150 Hb_009775_010--Hb_000580_150 Hb_000173_250 Hb_000173_250 Hb_009775_010--Hb_000173_250 Hb_001410_070 Hb_001410_070 Hb_009775_010--Hb_001410_070 Hb_001660_120 Hb_001660_120 Hb_009775_010--Hb_001660_120 Hb_001975_090 Hb_001975_090 Hb_004398_030--Hb_001975_090 Hb_007803_030 Hb_007803_030 Hb_004398_030--Hb_007803_030 Hb_004398_030--Hb_006816_180 Hb_000135_030 Hb_000135_030 Hb_004398_030--Hb_000135_030 Hb_000181_240 Hb_000181_240 Hb_004398_030--Hb_000181_240 Hb_004398_030--Hb_000627_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.12776 4.11107 6.0494 2.4343 3.02723 4.29945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59955 5.07168 4.84905 1.67833 9.88621

CAGE analysis